Author details

Full Name

Wanding Zhou

Affiliation

University of Pennsylvania

ORCID

Career Start Year

2011

Papers

H Index

Expertise

CM4AI Collaborator

Nathan Sheffield (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36617464	Comparative epigenome analysis using Infinium DNA methylation BeadChips.	Brief Bioinform	2023
37561875	DNA methylation networks underlying mammalian traits.	Science	2023
37786695	Low-input and single-cell methods for Infinium DNA methylation BeadChips.	bioRxiv	2023
35718270	Computational Methods for Single-cell DNA Methylome Analysis.	Genomics Proteomics Bioinformatics	2023
35145108	A mammalian methylation array for profiling methylation levels at conserved sequences.	Nat Commun	2022
35873672	DNA methylation dynamics and dysregulation delineated by high-throughput profiling in the mouse.	Cell Genom	2022
36130950	Characterizing DNA methylation signatures of retinoblastoma using aqueous humor liquid biopsy.	Nat Commun	2022
33982016	Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer.	STAR Protoc	2021
36750622	Host methylation predicts SARS-CoV-2 infection and clinical outcome.	Commun Med (Lond)	2021
34793513	A B-cell developmental gene regulatory network is activated in infant AML.	PLoS One	2021
34793451	EHMT2 suppresses the variation of transcriptional switches in the mouse embryo.	PLoS Genet	2021
34147133	Evaluation of whole-genome DNA methylation sequencing library preparation protocols.	Epigenetics Chromatin	2021
32386543	Large DNA Methylation Nadirs Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity.	Mol Cell	2020
32719115	DNA methylation enables transposable element-driven genome expansion.	Proc Natl Acad Sci U S A	2020
32636622	Mimicking the Endometrial Cancer Tumor Microenvironment to Reprogram Tumor-Associated Macrophages in Disintegrable Supramolecular Gelatin Hydrogel.	Int J Nanomedicine	2020
32245794	Activation of a Subset of Evolutionarily Young Transposable Elements and Innate Immunity Are Linked to Clinical Responses to 5-Azacytidine.	Cancer Res	2020
31433971	The Immune Landscape of Cancer.	Immunity	2019
29625050	Oncogenic Signaling Pathways in The Cancer Genome Atlas.	Cell	2018
29970451	Switching roles for DNA and histone methylation depend on evolutionary ages of human endogenous retroviruses.	Genome Res	2018
30185548	Dual Inhibition of DNA and Histone Methyltransferases Increases Viral Mimicry in Ovarian Cancer Cells.	Cancer Res	2018
29857221	Syntenin-targeted peptide blocker inhibits progression of cancer cells.	Eur J Med Chem	2018
29898407	Integrated Molecular Characterization of Testicular Germ Cell Tumors.	Cell Rep	2018
30085201	SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions.	Nucleic Acids Res	2018
30509985	Mother-child transmission of epigenetic information by tunable polymorphic imprinting.	Proc Natl Acad Sci U S A	2018
30361341	The chromatin accessibility landscape of primary human cancers.	Science	2018
29610480	DNA methylation loss in late-replicating domains is linked to mitotic cell division.	Nat Genet	2018
29774579	Integrative Epigenetic Analysis Reveals Therapeutic Targets to the DNA Methyltransferase Inhibitor Guadecitabine (SGI-110) in Hepatocellular Carcinoma.	Hepatology	2018
28061744	Comprehensive evaluation of extracellular small RNA isolation methods from serum in high throughput sequencing.	BMC Genomics	2017
28643795	The genomic landscape of tuberous sclerosis complex.	Nat Commun	2017
27924034	Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes.	Nucleic Acids Res	2017
27892959	novoBreak: local assembly for breakpoint detection in cancer genomes.	Nat Methods	2017
27573823	Vitamin C increases viral mimicry induced by 5-aza-2'-deoxycytidine.	Proc Natl Acad Sci U S A	2016
27356755	Hotspot mutations delineating diverse mutational signatures and biological utilities across cancer types.	BMC Genomics	2016
25605252	Functional consequence of the MET-T1010I polymorphism in breast cancer.	Oncotarget	2015
26513549	TransVar: a multilevel variant annotator for precision genomics.	Nat Methods	2015
26432246	An integrated map of structural variation in 2,504 human genomes.	Nature	2015
25918555	ClinSeK: a targeted variant characterization framework for clinical sequencing.	Genome Med	2015
25626406	Clinical actionability enhanced through deep targeted sequencing of solid tumors.	Clin Chem	2015
24389657	Bias from removing read duplication in ultra-deep sequencing experiments.	Bioinformatics	2014
25201439	Towards accurate characterization of clonal heterogeneity based on structural variation.	BMC Bioinformatics	2014
24244124	Modeling integrated cellular machinery using hybrid Petri-Boolean networks.	PLoS Comput Biol	2013
22974099	Convergent evolution of modularity in metabolic networks through different community structures.	BMC Evol Biol	2012
22985501	Quantifying and assessing the effect of chemical symmetry in metabolic pathways.	J Chem Inf Model	2012
21542923	Properties of metabolic graphs: biological organization or representation artifacts?	BMC Bioinformatics	2011
21551141	The strength of chemical linkage as a criterion for pruning metabolic graphs.	Bioinformatics	2011

1 - 45 of 45

Daniel H??bschmann

Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM)

Career Start Year 2016

Number of shared co-authors 5

Shantao Li

Yale University

Career Start Year 2015

Number of shared co-authors 7

Johanna Klughammer

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences

Career Start Year 2013

Number of shared co-authors 1

Marc Dabad

Universitat de Barcelona (UB)

Career Start Year 2013

Number of shared co-authors 8

Sebastian M Waszak

University of California san francisco

Career Start Year 2010

Number of shared co-authors 11

Marta Gut

Universitat de Barcelona (UB)

Career Start Year 2010

Number of shared co-authors 15

Pavlo Lutsik

Catholic University (KU) Leuven

Career Start Year 2010

Number of shared co-authors 5

H??ctor Corrada Bravo

University of Maryland College Park, College Park

Career Start Year 2009

Number of shared co-authors 3

Lukas Chavez

University of California San Diego

Career Start Year 2008

Number of shared co-authors 3

Jeroen de Ridder

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2006

Number of shared co-authors 3

Harmen J G van de Werken

Department of Immunology Erasmus University Medical Center

Career Start Year 2006

Number of shared co-authors 2

Altuna Akalin

Berlin Institute for Medical Systems Biology

Career Start Year 2006

Number of shared co-authors 1

Yassen Assenov

German Cancer Research Center (DKFZ)

Career Start Year 2006

Number of shared co-authors 5

Christoph Bock

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences

Career Start Year 2005

Number of shared co-authors 13

Chol-Hee Jung

University of Melbourne

Career Start Year 2005

Number of shared co-authors 2

Jun S Song

University of Illinois at Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 2

Andrew E Teschendorff

UCL Cancer Institute, University College London

Career Start Year 2005

Number of shared co-authors 11

Kun Zhang

China Pharmaceutical University

Career Start Year 2005

Number of shared co-authors 3

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 1

Peter J Park

Harvard Medical School

Career Start Year 2001

Number of shared co-authors 59

Ting Wang

Washington University School of Medicine

Career Start Year 2001

Number of shared co-authors 7

Paul Scheet

University of Texas M.D. Anderson Cancer Center

Career Start Year 2001

Number of shared co-authors 12

Amos Tanay

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 9

Martin Hirst

University of British Columbia

Career Start Year 1998

Number of shared co-authors 26

Guillaume Bourque

Institute for the Advanced Study of Human Biology (ASHBi), Kyoto University

Career Start Year 1997

Number of shared co-authors 14

Mark D Robinson

University of Zurich

Career Start Year 1997

Number of shared co-authors 4

Jay Shendure

University of Washington

Career Start Year 1996

Number of shared co-authors 15

Jean-Pierre A Kocher

Mayo Clinic

Career Start Year 1991

Number of shared co-authors 1

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 16

Holger Heyn

Barcelona Institute of Science and Technology, Spain Universitat Pompeu Fabra

Career Start Year 1988

Number of shared co-authors 14

row(s) 1 - 30 of 30

Ken Chen

University of Texas MD Anderson Cancer Center

Co-authored papers 10

Hui Shen

Van Andel Institute

Co-authored papers 10

Peter W Laird

Van Andel Institute

Co-authored papers 7

Zechen Chong

Heersink School of Medicine, University of Alabama at Birmingham

Co-authored papers 7

Funda Meric-Bernstam

University of Texas MD Anderson Cancer Center

Co-authored papers 6

Gordon B Mills

Knight Cancer Institute, Oregon Health and Sciences University

Co-authored papers 5

Andrew D Cherniack

Dana-Farber Cancer Institute

Co-authored papers 5

Tenghui Chen

MD Anderson Cancer Center

Co-authored papers 5

Steve Horvath

David Geffen School of Medicine, University of California los angeles

Co-authored papers 4

Jean Claude Zenklusen

National Cancer Institute

Co-authored papers 3

Katherine A Hoadley

Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill

Co-authored papers 3

Daniel J Weisenberger

Co-authored papers 3

Li Ding

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 3

Xian Fan

Rice University

Co-authored papers 3

Matthew Meyerson

Broad Institute

Co-authored papers 2

Toshinori Hinoue

Co-authored papers 2

Nikolaus Schultz

Memorial Sloan Kettering Cancer Center

Co-authored papers 2

Joshua Armenia

Oncology R&D

Co-authored papers 2

Ilya Shmulevich

Institute for Systems Biology

Co-authored papers 2

Matteo Pellegrini

Co-authored papers 2

Mark J Routbort

University of Texas MD Anderson Cancer Center

Co-authored papers 2

Ake T Lu

David Geffen School of Medicine

Co-authored papers 2

Reanne Bowlby

Co-authored papers 2

Francisco Vega

The University of Texas MD Anderson Cancer Center

Co-authored papers 2

Timothy J Triche

Center for Epigenetics, Van Andel Research Institute

Co-authored papers 2

Vesteinn Thorsson

Institute for Systems Biology

Co-authored papers 2

Alexander J Lazar

The University of Texas MD Anderson Cancer Center

Co-authored papers 2

Jason Ernst

Co-authored papers 2

Amy G Robertson

Present address: Dxige Research Inc.

Co-authored papers 2

Ina Felau

National Cancer Institute

Co-authored papers 2

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