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Author Details

Nicolas Terrapon
CNRS, Aix-Marseille University
2009
63
28
PMIDPaper TitleJournal TitlePublished Year
38093016Bioactive glycans in a microbiome-directed food for children with malnutrition.Nature2024
35307283Assembly and synthesis of the extracellular matrix in brown algae.Semin Cell Dev Biol2023
37585436An objective criterion to evaluate sequence-similarity networks helps in dividing the protein family sequence space.PLoS Comput Biol2023
37733741Inducible CRISPR-targeted "knockdown" of human gut <i>Bacteroides</i> in gnotobiotic mice discloses glycan utilization strategies.Proc Natl Acad Sci U S A2023
37645824Bioactive glycans in a microbiome-directed food for malnourished children.medRxiv2023
37645712<i>Prevotella copri</i>-related effects of a therapeutic food for malnutrition.bioRxiv2023
37500984BoGH13A<sub>Sus</sub> from Bacteroides ovatus represents a novel α-amylase used for  Bacteroides starch breakdown in the human gut.Cell Mol Life Sci2023
36945614Hadza <i>Prevotella</i> Require Diet-derived Microbiota Accessible Carbohydrates to Persist in Mice.bioRxiv2023
36806678A subfamily classification to choreograph the diverse activities within glycoside hydrolase family 31.J Biol Chem2023
35166563Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria.mSystems2022
35764090Microbial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans.Cell2022
35365790Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota.Nat Microbiol2022
35452491Functional exploration of the glycoside hydrolase family GH113.PLoS One2022
35931022Microbial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans.Cell2022
36322419Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans.Acta Crystallogr D Struct Biol2022
34850161The carbohydrate-active enzyme database: functions and literature.Nucleic Acids Res2022
35110564Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides.Nat Commun2022
34059129Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans.Biotechnol Biofuels2021
33571448Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles.Cell Host Microbe2021
34827630Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions.Biomolecules2021
34067621Genome Features of <i>Asaia</i> sp. W12 Isolated from the Mosquito <i>Anopheles stephensi</i> Reveal Symbiotic Traits.Genes (Basel)2021
32667876Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function.Microb Genom2020
31915220Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria.mSphere2020
32005816Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus.Nat Commun2020
33188211Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut.Nat Commun2020
33004077Investigating host-microbiome interactions by droplet based microfluidics.Microbiome2020
32859948Author Correction: Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus.Nat Commun2020
32630095Isolation and Characterization of Extracellular Vesicles Secreted In Vitro by Porcine Microbiota.Microorganisms2020
30850540Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space.Proc Natl Acad Sci U S A2019
31501245A subfamily roadmap of the evolutionarily diverse glycoside hydrolase family 16 (GH16).J Biol Chem2019
31600234Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains.PLoS One2019
31541200Author Correction: A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.Nat Microbiol2019
31539500Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans.Cell2019
31053724Bacteroidetes use thousands of enzyme combinations to break down glycans.Nat Commun2019
29088389PULDB: the expanded database of Polysaccharide Utilization Loci.Nucleic Acids Res2018
30349080A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.Nat Microbiol2018
29553575Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.Nat Biotechnol2018
29255254Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides.Nat Microbiol2018
28630303How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans.Proc Natl Acad Sci U S A2017
28434716A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9.Carbohydr Res2017
28329766Complex pectin metabolism by gut bacteria reveals novel catalytic functions.Nature2017
28396425Unusual active site location and catalytic apparatus in a glycoside hydrolase family.Proc Natl Acad Sci U S A2017
28091525A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic.Sci Rep2017
29411780Corrigendum: Complex pectin metabolism by gut bacteria reveals novel catalytic functions.Nature2017
29326667Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (<i>Castor canadensis</i>) and North American Moose (<i>Alces americanus</i>) after Long-Term Enrichment.Front Microbiol2017
28731473Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation.ISME J2017
28637865An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins.J Biol Chem2017
26920945Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.BMC Genomics2016
27863247A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility.Cell2016
27267263Erratum to: Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.BMC Genomics2016
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Collaborators

Andrei L Osterman
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 7
Dmitry A Rodionov
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 4
Erich Bornberg-Bauer
Institute for Evolution and Biodiversity, University of Munster
Co-authored papers 3
Christopher J Fields
University of Illinois Urbana-Champaign
Co-authored papers 3
William S York
Co-authored papers 2
Neha Varghese
Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Vincent B Young
University of Michigan ann arbor
Co-authored papers 2
Andrew D Moore
Institute for Evolution and Biodiversity, University of Munster
Co-authored papers 2
Paul Wilmes
University of Luxembourg
Co-authored papers 2
Emiley A Eloe-Fadrosh
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Julie A Mustard
Arizona State University
Co-authored papers 1
Zhensheng Chen
Co-authored papers 1
Monica C Munoz-Torres
University of Colorado Anschutz Medical Campus
Co-authored papers 1
Michael A D Goodisman
Georgia Institute of Technology
Co-authored papers 1
David A Liberles
Temple University
Co-authored papers 1
Judith Korb
University of Freiburg
Co-authored papers 1
Fengming Sun
Oil Crops Research Institute, Chinese Academy of Agricultural Sciences
Co-authored papers 1
Jin Xiao
Beijing Genomics Institute (BGI)-Shenzhen
Co-authored papers 1
Hailin Pan
Chinese Academy of Sciences
Co-authored papers 1
Zuoquan Yang
Horticultural Research Institute, Shanghai Academy of Agricultural Sciences
Co-authored papers 1
Richard Michael Roe
College of Agriculture and Life Sciences, NC State University
Co-authored papers 1
Kaustubh Gokhale
Arizona State University
Co-authored papers 1
Justin L Sonnenburg
Stanford University
Co-authored papers 1
Nikos C Kyrpides
Co-authored papers 1
Jun Wang
Zhongnan Hospital of Wuhan University
Co-authored papers 1
Justin T Reese
Lawrence Berkeley National Laboratory
Co-authored papers 1
Colin S Brent
USDA ARS, U.S. Arid Land Agricultural Research Center
Co-authored papers 1
Michael E Scharf
University of Florida
Co-authored papers 1
Tanja Woyke
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Andreas Vilcinskas
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Release 1.2