Author details

Full Name

Juan Esquivel-Rodr??guez

Affiliation

Costa Rica Institute of Technology

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
35959463	MarkovFit: Structure Fitting for Protein Complexes in Electron Microscopy Maps Using Markov Random Field.	Front Mol Biosci	2022
35959463	MarkovFit: Structure Fitting for Protein Complexes in Electron Microscopy Maps Using Markov Random Field.	Front Mol Biosci	2022
34206006	EvoSeg: Automated Electron Microscopy Segmentation through Random Forests and Evolutionary Optimization.	Biomimetics (Basel)	2021
34206006	EvoSeg: Automated Electron Microscopy Segmentation through Random Forests and Evolutionary Optimization.	Biomimetics (Basel)	2021
29329283	Modeling the assembly order of multimeric heteroprotein complexes.	PLoS Comput Biol	2018
29329283	Modeling the assembly order of multimeric heteroprotein complexes.	PLoS Comput Biol	2018
27654025	Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.	Proteins	2017
27654025	Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.	Proteins	2017
27232548	Ranking protein-protein docking results using steered molecular dynamics and potential of mean force calculations.	J Comput Chem	2016
27232548	Ranking protein-protein docking results using steered molecular dynamics and potential of mean force calculations.	J Comput Chem	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
26025554	Navigating 3D electron microscopy maps with EM-SURFER.	BMC Bioinformatics	2015
26183897	Tuning of Pectin Methylesterification: PECTIN METHYLESTERASE INHIBITOR 7 MODULATES THE PROCESSIVE ACTIVITY OF CO-EXPRESSED PECTIN METHYLESTERASE 3 IN A pH-DEPENDENT MANNER.	J Biol Chem	2015
26025554	Navigating 3D electron microscopy maps with EM-SURFER.	BMC Bioinformatics	2015
26183897	Tuning of Pectin Methylesterification: PECTIN METHYLESTERASE INHIBITOR 7 MODULATES THE PROCESSIVE ACTIVITY OF CO-EXPRESSED PECTIN METHYLESTERASE 3 IN A pH-DEPENDENT MANNER.	J Biol Chem	2015
24573477	3D-SURFER 2.0: web platform for real-time search and characterization of protein surfaces.	Methods Mol Biol	2014
24573484	Pairwise and multimeric protein-protein docking using the LZerD program suite.	Methods Mol Biol	2014
24573477	3D-SURFER 2.0: web platform for real-time search and characterization of protein surfaces.	Methods Mol Biol	2014
24573484	Pairwise and multimeric protein-protein docking using the LZerD program suite.	Methods Mol Biol	2014
23796504	Computational methods for constructing protein structure models from 3D electron microscopy maps.	J Struct Biol	2013
23843247	Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.	Proteins	2013
23796504	Computational methods for constructing protein structure models from 3D electron microscopy maps.	J Struct Biol	2013
23843247	Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.	Proteins	2013
22417139	Fitting multimeric protein complexes into electron microscopy maps using 3D Zernike descriptors.	J Phys Chem B	2012
22536869	Evaluation of multiple protein docking structures using correctly predicted pairwise subunits.	BMC Bioinformatics	2012
22417139	Fitting multimeric protein complexes into electron microscopy maps using 3D Zernike descriptors.	J Phys Chem B	2012
22488467	Multi-LZerD: multiple protein docking for asymmetric complexes.	Proteins	2012
23173833	Effect of conformation sampling strategies in genetic algorithm for multiple protein docking.	BMC Proc	2012
23173833	Effect of conformation sampling strategies in genetic algorithm for multiple protein docking.	BMC Proc	2012
22536869	Evaluation of multiple protein docking structures using correctly predicted pairwise subunits.	BMC Bioinformatics	2012
22488467	Multi-LZerD: multiple protein docking for asymmetric complexes.	Proteins	2012
21787306	Molecular surface representation using 3D Zernike descriptors for protein shape comparison and docking.	Curr Protein Pept Sci	2011
22001016	Community-wide assessment of protein-interface modeling suggests improvements to design methodology.	J Mol Biol	2011
21787306	Molecular surface representation using 3D Zernike descriptors for protein shape comparison and docking.	Curr Protein Pept Sci	2011
22001016	Community-wide assessment of protein-interface modeling suggests improvements to design methodology.	J Mol Biol	2011
19759195	3D-SURFER: software for high-throughput protein surface comparison and analysis.	Bioinformatics	2009
19759195	3D-SURFER: software for high-throughput protein surface comparison and analysis.	Bioinformatics	2009

1 - 38 of 38

Chengxin Zhang

University of Michigan ann arbor

Career Start Year 2017

Number of shared co-authors 4

Gerardo Tauriello

University of Basel

Career Start Year 2011

Number of shared co-authors 14

Rosalba Lepore

Basel University Hospital and University of Basel

Career Start Year 2011

Number of shared co-authors 4

Daniel B Roche

Universita degli Studi di Milano - Computer Science Department - AnacletoLab

Career Start Year 2010

Number of shared co-authors 4

Grigore Pintilie

Stanford University

Career Start Year 2009

Number of shared co-authors 4

Alexander S Rose

University of California San Diego

Career Start Year 2009

Number of shared co-authors 3

Guillaume Launay

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2007

Number of shared co-authors 3

Juergen Haas

University of Basel

Career Start Year 2007

Number of shared co-authors 4

Jaume Bonet

Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne

Career Start Year 2006

Number of shared co-authors 9

Frank DiMaio

University of Washington

Career Start Year 2006

Number of shared co-authors 16

Jinbo Xu

Toyota Technological Institute at Chicago

Career Start Year 2003

Number of shared co-authors 0

Yang Zhang

University of Michigan ann arbor

Career Start Year 2002

Number of shared co-authors 13

Maya Topf

Leibniz-Institut fur Virologie (LIV)

Career Start Year 2001

Number of shared co-authors 6

Jose M Duarte

University of California San Diego

Career Start Year 2000

Number of shared co-authors 4

Liam J McGuffin

University of Reading

Career Start Year 2000

Number of shared co-authors 11

Peter W Rose

University of California

Career Start Year 1999

Number of shared co-authors 4

Torsten Schwede

University of Basel

Career Start Year 1999

Number of shared co-authors 20

Matthew L Baker

McGovern Medical School at the University of Texas Health Science Center

Career Start Year 1998

Number of shared co-authors 6

Willy Wriggers

Old Dominion University

Career Start Year 1997

Number of shared co-authors 1

Roberto Sanchez

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai

Career Start Year 1996

Number of shared co-authors 4

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Career Start Year 1996

Number of shared co-authors 2

Baldo Oliva

Universitat Pompeu Fabra

Career Start Year 1991

Number of shared co-authors 4

Haim J Wolfson

Tel Aviv University

Career Start Year 1991

Number of shared co-authors 39

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 2

Gerard J Kleywegt

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1990

Number of shared co-authors 5

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 26

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 3

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 12

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 7

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 10

row(s) 1 - 30 of 30

Daisuke Kihara

Purdue University

Co-authored papers 18

Genki Terashi

Co-authored papers 5

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Co-authored papers 3

Amitava Roy

University of Montana

Co-authored papers 3

Hyungrae Kim

College of Dentistry, Dankook University.

Co-authored papers 3

Paul A Bates

The Francis Crick Institute

Co-authored papers 3

Juan Fern??ndez-Recio

Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)

Co-authored papers 3

Sanbo Qin

University of Illinois at Chicago

Co-authored papers 3

Jeffrey J Gray

Johns Hopkins University

Co-authored papers 3

Hasup Lee

Seoul National University

Co-authored papers 3

Chaok Seok

Seoul National University

Co-authored papers 3

Alexandre M J J Bonvin

Bijvoet Center for Biomolecular Research, Utrecht University

Co-authored papers 3

Sheng-You Huang

Huazhong University of Science and Technology

Co-authored papers 3

Huan-Xiang Zhou

University of Illinois Chicago

Co-authored papers 3

Brian G Pierce

University of Maryland Institute for Bioscience and Biotechnology Research

Co-authored papers 3

Xusi Han

Purdue University

Co-authored papers 3

Lenna X Peterson

Purdue University

Co-authored papers 3

Xiaoqin Zou

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 3

Thom Vreven

Visterra Inc.

Co-authored papers 3

Iain H Moal

GSK Medicines Research Centre

Co-authored papers 3

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 3

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Co-authored papers 3

Omar Demerdash

Co-authored papers 2

Mayuko Takeda-Shitaka

Co-authored papers 2

David Baker

University of Washington

Co-authored papers 2

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 2

Krishna Praneeth Kilambi

Co-authored papers 2

Julie C Mitchell

Co-authored papers 2

Shiyong Liu

Co-authored papers 2

Dmitri Beglov

Boston University

Co-authored papers 2

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