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Author Details

Jeroen F J Laros
National Institute for Public Health and the Environment
2009
43
20
PMIDPaper TitleJournal TitlePublished Year
36173614compareMS2 2.0: An Improved Software for Comparing Tandem Mass Spectrometry Datasets.J Proteome Res2023
37432120Metagenomic Surveillance of Viral Gastroenteritis in a Public Health Setting.Microbiol Spectr2023
36594541A Boolean algebra for genetic variants.Bioinformatics2023
35418585FAIR Genomes metadata schema promoting Next Generation Sequencing data reuse in Dutch healthcare and research.Sci Data2022
35459090Whole genome sequencing and the application of a SNP panel reveal primary evolutionary lineages and genomic variation in the lion (Panthera leo).BMC Genomics2022
32127641Comprehensive diagnostics of acute myeloid leukemia by whole transcriptome RNA sequencing.Leukemia2021
33538839Mutalyzer 2: next generation HGVS nomenclature checker.Bioinformatics2021
34484861Adenine base editing of the <i>DUX4</i> polyadenylation signal for targeted genetic therapy in facioscapulohumeral muscular dystrophy.Mol Ther Nucleic Acids2021
34126062Fecal Microbiota Transplantation Influences Procarcinogenic Escherichia coli in Recipient Recurrent Clostridioides difficile Patients.Gastroenterology2021
33452270A catalogue of 863 Rett-syndrome-causing MECP2 mutations and lessons learned from data integration.Sci Data2021
32866812Coronavirus discovery by metagenomic sequencing: a tool for pandemic preparedness.J Clin Virol2020
32058299Taxonomic classification and abundance estimation using 16S and WGS-A comparison using controlled reference samples.Forensic Sci Int Genet2020
30298554Annotating Transcriptional Effects of Genetic Variants in Disease-Relevant Tissue: Transcriptome-Wide Allelic Imbalance in Osteoarthritic Cartilage.Arthritis Rheumatol2019
31433103Dutch genome diagnostic laboratories accelerated and improved variant interpretation and increased accuracy by sharing data.Hum Mutat2019
31430635Archival, paleopathological and aDNA-based techniques in leprosy research and the case of Father Petrus Donders at the Leprosarium 'Batavia', Suriname.Int J Paleopathol2019
31060512BacTag - a pipeline for fast and accurate gene and allele typing in bacterial sequencing data based on database preprocessing.BMC Genomics2019
29706885Brain Transcriptomic Analysis of Hereditary Cerebral Hemorrhage With Amyloidosis-Dutch Type.Front Aging Neurosci2018
29852469Short hypervariable microhaplotypes: A novel set of very short high discriminating power loci without stutter artefacts.Forensic Sci Int Genet2018
27914278FDSTools: A software package for analysis of massively parallel sequencing data with the ability to recognise and correct STR stutter and other PCR or sequencing noise.Forensic Sci Int Genet2017
28471515Critical points for an accurate human genome analysis.Hum Mutat2017
26919047The Implicitome: A Resource for Rationalizing Gene-Disease Associations.PLoS One2016
26670121Non-sequential and multi-step splicing of the dystrophin transcript.RNA Biol2016
27300758Whole Gene Capture Analysis of 15 CRC Susceptibility Genes in Suspected Lynch Syndrome Patients.PLoS One2016
27347657Massively parallel sequencing of short tandem repeats-Population data and mixture analysis results for the PowerSeqâ¿¢ system.Forensic Sci Int Genet2016
26916109Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck.Genome Res2016
27033170Repeated FcεRI triggering reveals modified mast cell function related to chronic allergic responses in tissue.J Allergy Clin Immunol2016
26231427An efficient algorithm for the extraction of HGVS variant descriptions from sequences.Bioinformatics2015
26450963SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing.Nucleic Acids Res2015
23714750The Genome of the Netherlands: design, and project goals.Eur J Hum Genet2014
25514851Determining the quality and complexity of next-generation sequencing data without a reference genome.Genome Biol2014
25315204Roux-en-Y gastric bypass surgery, but not calorie restriction, reduces plasma branched-chain amino acids in obese women independent of weight loss or the presence of type 2 diabetes.Diabetes Care2014
25093075Preserving sequence annotations across reference sequences.J Biomed Semantics2014
25099943Downregulation of the acetyl-CoA metabolic network in adipose tissue of obese diabetic individuals and recovery after weight loss.Diabetologia2014
24532718TSSV: a tool for characterization of complex allelic variants in pure and mixed genomes.Bioinformatics2014
24670764A promoter-level mammalian expression atlas.Nature2014
23383274Exome sequencing of germline DNA from non-BRCA1/2 familial breast cancer cases selected on the basis of aCGH tumor profiling.PLoS One2013
24037425Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.Nat Biotechnol2013
24182360Aging as accelerated accumulation of somatic variants: whole-genome sequencing of centenarian and middle-aged monozygotic twin pairs.Twin Res Hum Genet2013
23975932DMD transcript imbalance determines dystrophin levels.FASEB J2013
23143598Loss-of-function mutations in IGSF1 cause an X-linked syndrome of central hypothyroidism and testicular enlargement.Nat Genet2012
21520333LOVD v.2.0: the next generation in gene variant databases.Hum Mutat2011
21992071A formalized description of the standard human variant nomenclature in Extended Backus-Naur Form.BMC Bioinformatics2011
19647708Tri-allelic SNP markers enable analysis of mixed and degraded DNA samples.Forensic Sci Int Genet2009
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Collaborators

Johan T den Dunnen
Leiden University Medical Center
Co-authored papers 15
Peter A C 't Hoen
Radboud University Medical Center
Co-authored papers 15
Gert-Jan B van Ommen
Co-authored papers 7
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Leiden University Medical Center (LUMC)Leiden
Co-authored papers 5
Zuotian Tatum
Leiden University Medical Center
Co-authored papers 4
Morris A Swertz
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Co-authored papers 4
Pieternella E Slagboom
Co-authored papers 4
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Co-authored papers 3
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Co-authored papers 3
Marco Roos
Leiden University Medical Center
Co-authored papers 3
Erik A Schultes
Leiden Institute for FAIR and Equitable Science
Co-authored papers 3
Rajaram Kaliyaperumal
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Co-authored papers 3
Mark Thompson
Leiden University Medical Center
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Marielle E van Gijn
University Medical Center Groningen
Co-authored papers 2
Gonneke Willemsen
Co-authored papers 2
Hailiang Mei
Leiden University Medical Center
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Ko Willems van Dijk
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Paul I W de Bakker
Vertex Pharmaceuticals
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Cisca Wijmenga
Co-authored papers 2
Cornelia M van Duijn
University of Oxford
Co-authored papers 2
Szymon M Kieſbasa
Co-authored papers 2
Marian Beekman
Co-authored papers 2
Andrew P Gibson
Center for Human and Clinical Genetics, Leiden University Medical Center
Co-authored papers 2
Kai Ye
Co-authored papers 2
Robin Andersson
University of Copenhagen
Co-authored papers 1
Yosuke Mizuno
Yokohama National University
Co-authored papers 1
Guojun Sheng
International Research Center for Medical Sciences (IRCMS), Kumamoto University
Co-authored papers 1
Christophe Simon
RIKEN Yokohama Institute
Co-authored papers 1
Benjamin M Good
Lawrence Berkeley National Laboratory
Co-authored papers 1
Barend Mons
Leiden University Medical Center
Co-authored papers 1
Release 1.2