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Author Details

Arif Harmanci
The University of Texas Health Science Center at Houston
2007
43
19
PMIDPaper TitleJournal TitlePublished Year
36729132Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma.Acta Neuropathol2023
37609241Enhancing Fairness in Disease Prediction by Optimizing Multiple Domain Adversarial Networks.bioRxiv2023
37285177Single-Cell Profiling of CD8+ T Cells in Acute Myeloid Leukemia Reveals a Continuous Spectrum of Differentiation and Clonal Hyperexpansion.Cancer Immunol Res2023
37318677Integrated clinical genomic analysis reveals xenobiotic metabolic genes are downregulated in meningiomas of current smokers.J Neurooncol2023
36993741Targeted gene expression profiling predicts meningioma outcomes and radiotherapy responses.Res Sq2023
36729132Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma.Acta Neuropathol2023
37529100Federated generalized linear mixed models for collaborative genome-wide association studies.iScience2023
37163233Single-Cell Profiling of CD8+ T Cells in Acute Myeloid Leukemia Reveals a Continuous Spectrum of Differentiation and Clonal Hyperexpansion.Cancer Immunol Res2023
37529100Federated generalized linear mixed models for collaborative genome-wide association studies.iScience2023
37609241Enhancing Fairness in Disease Prediction by Optimizing Multiple Domain Adversarial Networks.bioRxiv2023
36993741Targeted gene expression profiling predicts meningioma outcomes and radiotherapy responses.Res Sq2023
37318677Integrated clinical genomic analysis reveals xenobiotic metabolic genes are downregulated in meningiomas of current smokers.J Neurooncol2023
37285177Single-Cell Profiling of CD8+ T Cells in Acute Myeloid Leukemia Reveals a Continuous Spectrum of Differentiation and Clonal Hyperexpansion.Cancer Immunol Res2023
37163233Single-Cell Profiling of CD8+ T Cells in Acute Myeloid Leukemia Reveals a Continuous Spectrum of Differentiation and Clonal Hyperexpansion.Cancer Immunol Res2023
35108039Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies.Sci Adv2022
36182914SVAT: Secure outsourcing of variant annotation and genotype aggregation.BMC Bioinformatics2022
36038834Evaluation of vicinity-based hidden Markov models for genotype imputation.BMC Bioinformatics2022
36164820The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition.J Am Med Inform Assoc2022
35600406Cross-Talk Between Histone Methyltransferases and Demethylases Regulate REST Transcription During Neurogenesis.Front Oncol2022
36384083Privacy-aware estimation of relatedness in admixed populations.Brief Bioinform2022
36539717XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples.BMC Genomics2022
34982878Racial and Socioeconomic Disparities in Patients With Meningioma: A Retrospective Cohort Study.Neurosurgery2022
35108039Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies.Sci Adv2022
35600406Cross-Talk Between Histone Methyltransferases and Demethylases Regulate REST Transcription During Neurogenesis.Front Oncol2022
36539717XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples.BMC Genomics2022
36182914SVAT: Secure outsourcing of variant annotation and genotype aggregation.BMC Bioinformatics2022
36038834Evaluation of vicinity-based hidden Markov models for genotype imputation.BMC Bioinformatics2022
36384083Privacy-aware estimation of relatedness in admixed populations.Brief Bioinform2022
36164820The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition.J Am Med Inform Assoc2022
34982878Racial and Socioeconomic Disparities in Patients With Meningioma: A Retrospective Cohort Study.Neurosurgery2022
33469989REST promotes ETS1-dependent vascular growth in medulloblastoma.Mol Oncol2021
33902690Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers.Genome Med2021
33469989REST promotes ETS1-dependent vascular growth in medulloblastoma.Mol Oncol2021
34464590Ultrafast homomorphic encryption models enable secure outsourcing of genotype imputation.Cell Syst2021
33902690Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers.Genome Med2021
34464590Ultrafast homomorphic encryption models enable secure outsourcing of genotype imputation.Cell Syst2021
31501853EpiSAFARI: sensitive detection of valleys in epigenetic signals for enhancing annotations of functional elements.Bioinformatics2020
32315286HDAC inhibitors elicit metabolic reprogramming by targeting super-enhancers in glioblastoma models.J Clin Invest2020
31900397CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data.Nat Commun2020
32084333Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences.Cell2020
32918447SCOR: A secure international informatics infrastructure to investigate COVID-19.J Am Med Inform Assoc2020
32693816iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.BMC Med Genomics2020
33186529Data Sanitization to Reduce Private Information Leakage from Functional Genomics.Cell2020
32949309Identification of novel fusion transcripts in meningioma.J Neurooncol2020
32728046An integrative ENCODE resource for cancer genomics.Nat Commun2020
33168059SVFX: a machine learning framework to quantify the pathogenicity of structural variants.Genome Biol2020
31501853EpiSAFARI: sensitive detection of valleys in epigenetic signals for enhancing annotations of functional elements.Bioinformatics2020
32084333Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences.Cell2020
31900397CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data.Nat Commun2020
33168059SVFX: a machine learning framework to quantify the pathogenicity of structural variants.Genome Biol2020
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Collaborators

Mark Gerstein
Yale University
Co-authored papers 15
Akdes Serin Harmanci
Co-authored papers 9
Xiaoqian Jiang
Carnegie Mellon University, The University of Texas Health Science Center at Houston, University of California San Diego
Co-authored papers 8
Joel Rozowsky
Co-authored papers 8
Tiemo J Klisch
Co-authored papers 7
Akash J Patel
Co-authored papers 7
James C Bayley
Co-authored papers 5
Alexej Abyzov
Co-authored papers 4
Michael Snyder
Stanford University
Co-authored papers 4
Declan Clarke
Co-authored papers 4
Lucas Lochovsky
Co-authored papers 3
Haixu Tang
Indiana University
Co-authored papers 3
Robert R Kitchen
Co-authored papers 3
Kevin Y Yip
Co-authored papers 3
Sushant Kumar
Co-authored papers 3
Lucila Ohno-Machado
Escola de Administracao de Empresas - FGV, Stanford University, University of California San Diego, University of Sao Paulo, Yale School of Medicine
Co-authored papers 3
Jing Leng
Co-authored papers 3
Lucila Ohno-Machado
Co-authored papers 3
Chao Cheng
Baylor College of Medicine
Co-authored papers 3
Heidi J Sofia
National Human Genome Research Institute
Co-authored papers 3
Shantao Li
Yale University
Co-authored papers 3
Koon-Kiu Yan
Co-authored papers 3
Shaoke Lou
Co-authored papers 2
Mark A Rubin
University of Bern
Co-authored papers 2
Juan R Troncoso-Pastoriza
EPFL.
Co-authored papers 2
Steven E Brenner
University of California berkeley
Co-authored papers 2
Jean-Pierre Hubaux
EPFL.
Co-authored papers 2
Carrie A Davis
Stanford University
Co-authored papers 2
Tsung-Ting Kuo
University of California San Diego
Co-authored papers 2
Jonathan Warrell
Co-authored papers 2
Release 1.2