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Author Details

Jessica C Mar
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
2005
67
30
PMIDPaper TitleJournal TitlePublished Year
37314668Deconstructing heterogeneity of replicative senescence in human mesenchymal stem cells at single cell resolution.Geroscience2024
37864221Measuring cell-to-cell expression variability in single-cell RNA-sequencing data: a comparative analysis and applications to B cell aging.Genome Biol2023
35193955Redox signaling by glutathione peroxidase 2 links vascular modulation to metabolic plasticity of breast cancer.Proc Natl Acad Sci U S A2022
35468848Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease.Acta Neuropathol Commun2022
36691728scShapes: a statistical framework for identifying distribution shapes in single-cell RNA-sequencing data.Gigascience2022
36345277<i>Biophysical Reviews</i> special issue call: quantitative methods to decipher cellular heterogeneity - from single-cell to spatial omic methods.Biophys Rev2022
36151725How does the structure of data impact cell-cell similarity? Evaluating how structural properties influence the performance of proximity metrics in single cell RNA-seq data.Brief Bioinform2022
35111809Computational Methods for Single-Cell Imaging and Omics Data Integration.Front Mol Biosci2022
32413329Snai2 Maintains Bone Marrow Niche Cells by Repressing Osteopontin Expression.Dev Cell2020
33030717What Barriers Exist in the Minds of Vaccine-Hesitant Parents, and How Can We Address Them?Fam Med2020
33371881The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data.BMC Bioinformatics2020
33071237Metformin alters skeletal muscle transcriptome adaptations to resistance training in older adults.Aging (Albany NY)2020
33153500Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types.Biol Sex Differ2020
32678846Protein-Protein interactions uncover candidate 'core genes' within omnigenic disease networks.PLoS Genet2020
32894083Identification of a novel subgroup of endometrial cancer patients with loss of thyroid hormone receptor beta expression and improved survival.BMC Cancer2020
30617454The rise of the distributions: why non-normality is important for understanding the transcriptome and beyond.Biophys Rev2019
31861976Investigating skewness to understand gene expression heterogeneity in large patient cohorts.BMC Bioinformatics2019
31890855Estrogen activates Alzheimer's disease genes.Alzheimers Dement (N Y)2019
31324840A direct comparison of interphase FISH versus low-coverage single cell sequencing to detect aneuploidy reveals respective strengths and weaknesses.Sci Rep2019
31296308A comparison of survival analysis methods for cancer gene expression RNA-Sequencing data.Cancer Genet2019
31208319Aneuvis: web-based exploration of numerical chromosomal variation in single cells.BMC Bioinformatics2019
30820027A novel approach to modelling transcriptional heterogeneity identifies the oncogene candidate CBX2 in invasive breast carcinoma.Br J Cancer2019
29383869Metformin regulates metabolic and nonmetabolic pathways in skeletal muscle and subcutaneous adipose tissues of older adults.Aging Cell2018
29914350Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data.BMC Bioinformatics2018
29934585Stem cell factor is selectively secreted by arterial endothelial cells in bone marrow.Nat Commun2018
30314756The Majority of CD45<sup>-</sup> Ter119<sup>-</sup> CD31<sup>-</sup> Bone Marrow Cell Fraction Is of Hematopoietic Origin and Contains Erythroid and Lymphoid Progenitors.Immunity2018
28560097<i>pathVar:</i> a new method for pathway-based interpretation of gene expression variability.PeerJ2017
28836234Weight Management in Patients with Type 1 Diabetes and Obesity.Curr Diab Rep2017
28754563Changes in gene expression variability reveal a stable synthetic lethal interaction network in BRCA2-ovarian cancers.Methods2017
27738012Self-renewal of a purified Tie2+ hematopoietic stem cell population relies on mitochondrial clearance.Science2016
28725466Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks.NPJ Syst Biol Appl2016
25359525Chromosome instability in diffuse large B cell lymphomas is suppressed by activation of the noncanonical NF-κB pathway.Int J Cancer2015
26658111Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage.PLoS One2015
26288249Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development.PLoS Genet2015
26083751Corrigendum: Divergent reprogramming routes lead to alternative stem-cell states.Nature2015
26083747Corrigendum: Genome-wide characterization of the routes to pluripotency.Nature2015
25733965Single-cell transcriptogenomics reveals transcriptional exclusion of ENU-mutated alleles.Mutat Res2015
24670764A promoter-level mammalian expression atlas.Nature2014
25503233Genome-wide characterization of the routes to pluripotency.Nature2014
25503232Divergent reprogramming routes lead to alternative stem-cell states.Nature2014
25254348Gene expression variability as a unifying element of the pluripotency network.Stem Cell Reports2014
25327398The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences.Nat Commun2014
24787348Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization.PLoS Genet2014
24936473Single-cell gene expression profiles define self-renewing, pluripotent, and lineage primed states of human pluripotent stem cells.Stem Cell Reports2014
24156252Temporal dynamics and transcriptional control using single-cell gene expression analysis.Genome Biol2013
24107994Arteriolar niches maintain haematopoietic stem cell quiescence.Nature2013
24157203Not to be suppressed? Rethinking the host response at a root-parasite interface.Plant Sci2013
22247278nEASE: a method for gene ontology subclassification of high-throughput gene expression data.Bioinformatics2012
23197857Induced pluripotent stem cells from ataxia-telangiectasia recapitulate the cellular phenotype.Stem Cells Transl Med2012
22761553Viral perturbations of host networks reflect disease etiology.PLoS Comput Biol2012
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Collaborators

John Quackenbush
Harvard T. H. Chan School of Public Health
Co-authored papers 17
Christine A Wells
The University of Melbourne
Co-authored papers 13
Ernst J Wolvetang
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
Co-authored papers 6
Sean M Grimmond
The University of Melbourne
Co-authored papers 5
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 5
Paul S Frenette
Co-authored papers 5
John M Greally
Co-authored papers 5
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Fumio Nakahara
Graduate School of Medicine, The University of Tokyo
Co-authored papers 4
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 3
Qiaozhi Wei
Co-authored papers 3
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 3
Mariko Okada-Hatakeyama
Institute for Protein Research, Osaka University
Co-authored papers 3
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 3
Deanne Taylor
Co-authored papers 3
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 3
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 3
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Colin A Semple
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 2
Andreas Lennartsson
Karolinska Institute
Co-authored papers 2
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 2
Michihira Tagami
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Daniel Carbajo
Institut de Quimica Avancada de Catalunya (IQAC-CSIC)
Co-authored papers 2
Martin S Taylor
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 2
Albert J R Heck
Utrecht University
Co-authored papers 2
Christophe Simon
RIKEN Yokohama Institute
Co-authored papers 2
Winston Hide
Harvard Medical School
Co-authored papers 2
Noriko Ninomiya
Japan Tobacco Inc.
Co-authored papers 2
Release 1.2