Author details

Full Name

Jennifer Clarke

Affiliation

Department of Food Science and Technology, University of Nebraska-Lincoln

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36883813	Evidence for a Causal Role for Escherichia coli Strains Identified as Adherent-Invasive (AIEC) in Intestinal Inflammation.	mSphere	2023
37971715	Data sharing andÂ ontology use among agricultural genetics, genomics, andÂ breeding databases andÂ resources ofÂ the Agbiodata Consortium.	Database (Oxford)	2023
34730272	A systematic review and meta-analysis of the efficacy of processing stages and interventions for controlling Campylobacter contamination during broiler chicken processing.	Compr Rev Food Sci Food Saf	2022
35895196	Experimental Design for Controlled Environment High-Throughput Plant Phenotyping.	Methods Mol Biol	2022
34980221	The Agricultural Genome to Phenome Initiative (AG2PI): creating a shared vision across crop and livestock research communities.	Genome Biol	2022
35066408	The application of the skin virome for human identification.	Forensic Sci Int Genet	2022
33450871	Development of a Multiplex Real-Time PCR Assay for Predicting Macrolide and Tetracycline Resistance Associated with Bacterial Pathogens of Bovine Respiratory Disease.	Pathogens	2021
34233249	Predicting antibiotic resistance gene abundance in activated sludge using shotgun metagenomics and machine learning.	Water Res	2021
31536147	Assessment of the Dose-Response Relationship Between Folate Exposure and Cognitive Impairment: Synthesizing Data from Documented Studies.	Risk Anal	2020
31978071	Association between baseline abundance of Peptoniphilus, a Gram-positive anaerobic coccus, and wound healing outcomes of DFUs.	PLoS One	2020
31292434	Time series modeling of cell cycle exit identifies Brd4 dependent regulation of cerebellar neurogenesis.	Nat Commun	2019
31847122	Post-ER Stress Biogenesis of Golgi Is Governed by Giantin.	Cells	2019
31667471	Reclassifying Pseudopolyps in Inflammatory Bowel Disease: Histologic and Endoscopic Description in the New Era of Mucosal Healing.	Crohns Colitis 360	2019
30275894	Analysis of genetic and nongenetic factors influencing triglycerides-lowering drug effects based on paired observations.	BMC Proc	2018
29954454	Probiotic Bifidobacterium strains and galactooligosaccharides improve intestinal barrier function in obese adults but show no synergism when used together as synbiotics.	Microbiome	2018
30060746	Role of whole grains versus fruits and vegetables in reducing subclinical inflammation and promoting gastrointestinal health in individuals affected by overweight and obesity: a randomized controlled trial.	Nutr J	2018
30137212	The human brainome: network analysis identifies HSPA2 as a novel Alzheimer&rsquo;s disease target.	Brain	2018
25752319	Body composition, pre-diabetes and cardiovascular disease risk in early schizophrenia.	Early Interv Psychiatry	2017
29255158	A gut pathobiont synergizes with the microbiota to instigate inflammatory disease marked by immunoreactivity against other symbionts but not itself.	Sci Rep	2017
27283689	Effects of processing moisture on the physical properties and in vitro digestibility of starch and protein in extruded brown rice and pinto bean composite flours.	Food Chem	2016
27634377	EnsCat: clustering of categorical data via ensembling.	BMC Bioinformatics	2016
27548236	Cranberries and Cancer: An Update of Preclinical Studies Evaluating the Cancer Inhibitory Potential of Cranberry and Cranberry Derived Constituents.	Antioxidants (Basel)	2016
25370469	A novel MAPK-microRNA signature is predictive of hormone-therapy resistance and poor outcome in ER-positive breast cancer.	Clin Cancer Res	2015
26583503	Development of Advanced Imaging Criteria for the Endoscopic Identification of Inflammatory Polyps.	Clin Transl Gastroenterol	2015
26691573	Alignment behaviors of short peptides provide a roadmap for functional profiling of metagenomic data.	BMC Genomics	2015
25290986	Epigenetic pathways and glioblastoma treatment: insights from signaling cascades.	J Cell Biochem	2015
24887394	In silico and Ex vivo approaches identify a role for toll-like receptor 4 in colorectal cancer.	J Exp Clin Cancer Res	2014
25551752	Identifying glioblastoma gene networks based on hypergeometric test analysis.	PLoS One	2014
25270120	Infiltrating S100A8+ myeloid cells promote metastatic spread of human breast cancer and predict poor clinical outcome.	Breast Cancer Res Treat	2014
23807265	Epigenetic pathways and glioblastoma treatment.	Epigenetics	2013
23594746	Characteristics of cross-hybridization and cross-alignment of expression in pseudo-xenograft samples by RNA-Seq and microarrays.	J Clin Bioinforma	2013
21947683	Simultaneous analysis of tumor and stromal gene expression profiles from xenograft models.	Breast Cancer Res Treat	2012
23118918	A new mouse model for the study of human breast cancer metastasis.	PLoS One	2012
22701083	Retinoblastoma treatment: impact of the glycolytic inhibitor 2-deoxy-d-glucose on molecular genomics expression in LH(BETA)T(AG) retinal tumors.	Clin Ophthalmol	2012
22559202	Label-free quantitative LC-MS proteomics of Alzheimer's disease and normally aged human brains.	J Proteome Res	2012
22336639	The effects of child abuse and neglect on cognitive functioning in adulthood.	J Psychiatr Res	2012
20514491	Osteosarcoma: improvement in survival limited to high-grade patients only.	J Cancer Res Clin Oncol	2011
22279419	MicroRNA alterations in Barrett's esophagus, esophageal adenocarcinoma, and esophageal adenocarcinoma cell lines following cranberry extract treatment: Insights for chemoprevention.	J Carcinog	2011
21571674	Regional and temporal differences in gene expression of LH(BETA)T(AG) retinoblastoma tumors.	Invest Ophthalmol Vis Sci	2011
20202973	Statistical expression deconvolution from mixed tissue samples.	Bioinformatics	2010
20595686	The role of SATB1 in breast cancer pathogenesis.	J Natl Cancer Inst	2010
19318476	Microarray analysis of early stage serous ovarian cancers shows profiles predictive of favorable outcome.	Clin Cancer Res	2009
20617104	Prequential Analysis of Complex Data with Adaptive Model Reselection.	Stat Anal Data Min	2009
19361613	Genetic control of human brain transcript expression in Alzheimer disease.	Am J Hum Genet	2009
18618012	Bayesian Weibull tree models for survival analysis of clinico-genomic data.	Stat Methodol	2008
17290060	An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer.	J Clin Oncol	2007
16472935	Prognostic index score and clinical prediction model of local regional recurrence after mastectomy in breast cancer patients.	Int J Radiat Oncol Biol Phys	2006
17009964	Identification of genes associated with ovarian cancer metastasis using microarray expression analysis.	Int J Gynecol Cancer	2006

1 - 48 of 48

Jeffrey A Thompson

University of Kansas Medical Center

Career Start Year 2013

Number of shared co-authors 0

Levi Waldron

City University of New York School of Public Health

Career Start Year 2009

Number of shared co-authors 0

Stephen R Piccolo

Brigham Young University

Career Start Year 2008

Number of shared co-authors 2

Kim-Anh L?? Cao

University of Melbourne

Career Start Year 2007

Number of shared co-authors 0

Eunjee Lee

Chungnam National University

Career Start Year 2007

Number of shared co-authors 4

Arnaud Droit

Centre de Recherche du CHU de Quebec-Universite, Universite Laval

Career Start Year 2005

Number of shared co-authors 1

Nathalie Pochet

Broad Institute of MIT and Harvard

Career Start Year 2004

Number of shared co-authors 2

Jianhua Hu

Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences

Career Start Year 2004

Number of shared co-authors 0

Jiang Gui

Geisel School of Medicine at Dartmouth

Career Start Year 2004

Number of shared co-authors 0

J??rg Rahnenf??hrer

TU Dortmund University

Career Start Year 2002

Number of shared co-authors 0

Syed Haider

Institute of Cancer Research

Career Start Year 2002

Number of shared co-authors 1

Jean Yee Hwa Yang

The University of Sydney

Career Start Year 2001

Number of shared co-authors 0

Mikhail G Dozmorov

Virginia Commonwealth University

Career Start Year 2001

Number of shared co-authors 0

George C Tseng

University of Pittsburgh School of Public Health

Career Start Year 2001

Number of shared co-authors 1

Shawn Levy

HudsonAlpha Institute for Biotechnology

Career Start Year 1999

Number of shared co-authors 4

Youping Deng

John A. Burns School of Medicine, University of Hawaii at Manoa

Career Start Year 1999

Number of shared co-authors 0

Kerby Shedden

University of Michigan ann arbor

Career Start Year 1999

Number of shared co-authors 0

Jeffrey S Morris

Perelman School of Medicine, University of Pennsylvania

Career Start Year 1999

Number of shared co-authors 0

Shannon K McWeeney

Oregon Health & Science University, University of California Berkeley

Career Start Year 1997

Number of shared co-authors 4

Sudhir Varma

Center for Cancer Research, National Cancer Institute

Career Start Year 1994

Number of shared co-authors 1

Russell D Wolfinger

SAS Institute

Career Start Year 1994

Number of shared co-authors 1

Atul J Butte

Bakar Computational Health Sciences Institute, University of California san francisco

Career Start Year 1993

Number of shared co-authors 1

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 0

Keith A Baggerly

The University of Texas MD Anderson Cancer Center

Career Start Year 1991

Number of shared co-authors 2

Kevin R Coombes

Medical College of Georgia

Career Start Year 1990

Number of shared co-authors 0

Luigi Marchionni

Weill-Cornell School of Medicine

Career Start Year 1989

Number of shared co-authors 1

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 2

Yudi Pawitan

Karolinska Institute

Career Start Year 1988

Number of shared co-authors 3

Paul C Boutros

University of California los angeles

Career Start Year 1970

Number of shared co-authors 6

Rainer Spang

University of Regensburg

Career Start Year 1969

Number of shared co-authors 0

row(s) 1 - 30 of 30

Nagi G Ayad

Co-authored papers 4

Heather Gordish-Dressman

Co-authored papers 3

Andrew Berchuck

Duke School of Medicine

Co-authored papers 3

Vasileios Stathias

Co-authored papers 3

Richard D Smith

Pacific Northwest National Laboratory

Co-authored papers 2

William K Scott

John P. Hussman Institute for Human Genomics.

Co-authored papers 2

Deborah L Berry

Lombardi Comprehensive Cancer Center, Georgetown University

Co-authored papers 2

Robyn A Sayer

Westmead Hospital

Co-authored papers 2

Eric M Reiman

Banner Alzheimer's Institute

Co-authored papers 2

Matthew J Huentelman

The Translational Genomics Research Institute (TGen)

Co-authored papers 2

Vladislav A Petyuk

Pacific Northwest National Laboratory

Co-authored papers 2

Noam D Beckmann

Icahn School of Medicine at Mount Sinai.

Co-authored papers 1

Rex T Nelson

USDA, Corn Insects and Crop Genetics Research Unit, Iowa State University

Co-authored papers 1

Anne E Thessen

Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology

Co-authored papers 1

David A Bennett

Rush University Medical Center

Co-authored papers 1

Rebecca Sutphen

College of Medicine, University of South Florida

Co-authored papers 1

Sunita Kumari

Co-authored papers 1

Taner Z Sen

USDA, Crop Improvement Genetics Research Unit, Western Regional Research Center

Co-authored papers 1