Author details

Full Name

James A Overton

Affiliation

Knocean Inc.

ORCID

Career Start Year

2013

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36763096	Coronavirus Immunotherapeutic Consortium Database.	Database (Oxford)	2023
37693565	A systems vaccinology resource to develop and test computational models of immunity.	bioRxiv	2023
37327781	Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients.	Cell Rep Med	2023
35042788	Minimal Information about MHC Multimers (MIAMM).	J Immunol	2022
35616100	A Simple Standard for Sharing Ontological Mappings (SSSOM).	Database (Oxford)	2022
36208225	Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.	Database (Oxford)	2022
34244718	Standardization of assay representation in the Ontology for Biomedical Investigations.	Database (Oxford)	2021
33772585	An immunologically friendly classification of non-peptidic ligands.	Database (Oxford)	2021
34697637	OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.	Database (Oxford)	2021
32283555	A structured model for immune exposures.	Database (Oxford)	2020
30357391	The Immune Epitope Database (IEDB): 2018 update.	Nucleic Acids Res	2019
31357927	ROBOT: A Tool for Automating Ontology Workflows.	BMC Bioinformatics	2019
31272390	Reporting and connecting cell type names and gating definitions through ontologies.	BMC Bioinformatics	2019
29329592	The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.	J Biomed Semantics	2018
29688357	Identification of errors in the IEDB using ontologies.	Database (Oxford)	2018
29688354	FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.	Database (Oxford)	2018
28003147	Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem.	J Biomed Inform	2017
28365732	Better living through ontologies at the Immune Epitope Database.	Database (Oxford)	2017
26759709	An ontology for major histocompatibility restriction.	J Biomed Semantics	2016
27128319	The Ontology for Biomedical Investigations.	PLoS One	2016
26801764	Semantic representation of reported measurements in radiology.	BMC Med Inform Decis Mak	2016
25300482	The immune epitope database (IEDB) 3.0.	Nucleic Acids Res	2015
26167381	Biomedical imaging ontologies: A survey and proposal for future work.	J Pathol Inform	2015
23734660	Query enhancement through the practical application of ontology: the IEDB and OBI.	J Biomed Semantics	2013

1 - 24 of 24

Drashtti Vasant

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2014

Number of shared co-authors 9

Jerven Bolleman

carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4

Career Start Year 2013

Number of shared co-authors 14

Elvira Mitraka

University of Maryland School of Medicine

Career Start Year 2010

Number of shared co-authors 9

Prashanti Manda

University of North Carolina at Greensboro

Career Start Year 2009

Number of shared co-authors 3

Janna Hastings

Institute for Implementation Science in Health Care, University of Zurich

Career Start Year 2008

Number of shared co-authors 17

Csongor Nyulas

Stanford University

Career Start Year 2008

Number of shared co-authors 4

Sirarat Sarntivijai

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2007

Number of shared co-authors 23

Christopher J O Baker

University of New Brunswick

Career Start Year 2007

Number of shared co-authors 2

Helena F Deus

Elsevier Inc.

Career Start Year 2006

Number of shared co-authors 3

Robert Hoehndorf

King Abdullah University of Science and Technology

Career Start Year 2006

Number of shared co-authors 13

Leyla Garcia

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 9

Cui Tao

The University of Texas Health Science Center at Houston

Career Start Year 2002

Number of shared co-authors 18

Indra Neil Sarkar

Center for Biomedical Informatics, Brown University

Career Start Year 2001

Number of shared co-authors 1

Andrew I Su

The Scripps Research Institute

Career Start Year 2001

Number of shared co-authors 13

Michael Bada

Center for Health AI, University of Colorado Anschutz Medical Campus

Career Start Year 2000

Number of shared co-authors 11

Georgios V Gkoutos

Institute of Cancer and Genomic Sciences, University of Birmingham

Career Start Year 2000

Number of shared co-authors 17

Tony Burdett

European Bioinformatics Institute

Career Start Year 2000

Number of shared co-authors 20

Marco Roos

Leiden University Medical Center

Career Start Year 1999

Number of shared co-authors 17

Nicola Mulder

University of Cape Town

Career Start Year 1999

Number of shared co-authors 11

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 2

Cecilia N Arighi

University of Delaware

Career Start Year 1998

Number of shared co-authors 18

Robert Stevens

The University of Manchester

Career Start Year 1998

Number of shared co-authors 23

Henning Hermjakob

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1997

Number of shared co-authors 33

Katherine Wolstencroft

Leiden Institute of Advanced Computer Science, Leiden University

Career Start Year 1997

Number of shared co-authors 17

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Career Start Year 1993

Number of shared co-authors 10

Lawrence E Hunter

University of Colorado School of Medicine

Career Start Year 1993

Number of shared co-authors 4

Carole Goble

University of Manchester

Career Start Year 1993

Number of shared co-authors 21

Martin Boeker

Institute of AI and Informatics in Medicine, Technical University of Munich

Career Start Year 1992

Number of shared co-authors 2

Mark A Musen

Stanford Center for Biomedical Informatics Research, Stanford University

Career Start Year 1987

Number of shared co-authors 19

Warren A Kibbe

Duke Clinical Research Institute, Duke University

Career Start Year 1987

Number of shared co-authors 13

row(s) 1 - 30 of 30

Bjoern Peters

University of Washington School of Medicine

Co-authored papers 17

Randi Vita

Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology

Co-authored papers 15

Alessandro Sette

Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology

Co-authored papers 10

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 5

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 4

Jason A Greenbaum

Co-authored papers 4

Jie Zheng

University of Pennsylvania Perelman School of Medicine

Co-authored papers 4

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Co-authored papers 4

Melissa A Haendel

Co-authored papers 4

James P Balhoff