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Author Details

Daniel R Zerbino
European Bioinformatics Institute
2005
46
29
PMIDPaper TitleJournal TitlePublished Year
34634797The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.Nucleic Acids Res2022
36038072Culture-Associated DNA Methylation Changes Impact on Cellular Function of Human Intestinal Organoids.Cell Mol Gastroenterol Hepatol2022
34791404Ensembl 2022.Nucleic Acids Res2022
32814113Transcription and DNA Methylation Patterns of Blood-Derived CD8<sup>+</sup> T Cells Are Associated With Age and Inflammatory Bowel Disease But Do Not Predict Prognosis.Gastroenterology2021
34493866A compendium of uniformly processed human gene expression and splicing quantitative trait loci.Nat Genet2021
34389511Sequence Ontology terminology for gene regulation.Biochim Biophys Acta Gene Regul Mech2021
34220930The FAANG Data Portal: Global, Open-Access, "FAIR", and Richly Validated Genotype to Phenotype Data for High-Quality Functional Annotation of Animal Genomes.Front Genet2021
34249331Recommendations for the FAIRification of genomic track metadata.F1000Res2021
33137190Ensembl 2021.Nucleic Acids Res2021
33270111GENCODE 2021.Nucleic Acids Res2021
32421357Progress, Challenges, and Surprises in Annotating the Human Genome.Annu Rev Genomics Hum Genet2020
31930349The open targets post-GWAS analysis pipeline.Bioinformatics2020
31691826Ensembl 2020.Nucleic Acids Res2020
30407521Ensembl 2019.Nucleic Acids Res2019
31368484Sequence tube maps: making graph genomes intuitive to commuters.Bioinformatics2019
30357393GENCODE reference annotation for the human and mouse genomes.Nucleic Acids Res2019
29155950Ensembl 2018.Nucleic Acids Res2018
30311252FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community.Anim Genet2018
27899575Ensembl 2017.Nucleic Acids Res2017
28365736Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation.Database (Oxford)2017
27111036Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences.Nat Genet2016
27687569Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs.BMC Bioinformatics2016
27863249Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters.Cell2016
27306882CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.Genome Biol2016
26888907Ensembl regulation resources.Database (Oxford)2016
26687719Ensembl 2016.Nucleic Acids Res2016
25352552Ensembl 2015.Nucleic Acids Res2015
25887522The ensembl regulatory build.Genome Biol2015
25565268Building a pan-genome reference for a population.J Comput Biol2015
24363377WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis.Bioinformatics2014
24946830A unifying model of genome evolution under parsimony.BMC Bioinformatics2014
24316576Ensembl 2014.Nucleic Acids Res2014
23505295HAL: a hierarchical format for storing and analyzing multiple genome alignments.Bioinformatics2013
23793381The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability.Brief Bioinform2013
22368243Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels.Bioinformatics2012
22499938Integrating genomes.Science2012
21665927Cactus: Algorithms for genome multiple sequence alignment.Genome Res2011
21926179Assemblathon 1: a competitive assessment of de novo short read assembly methods.Genome Res2011
19906712Improvements to services at the European Nucleotide Archive.Nucleic Acids Res2010
20836074Using the Velvet de novo assembler for short-read sequencing technologies.Curr Protoc Bioinformatics2010
20123915A new strategy for genome assembly using short sequence reads and reduced representation libraries.Genome Res2010
20027311Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler.PLoS One2009
17985353An efficient conformational sampling method for homology modeling.Proteins2008
18349386Velvet: algorithms for de novo short read assembly using de Bruijn graphs.Genome Res2008
15752593Core deformations in protein families: a physical perspective.Biophys Chem2005
15542556An analysis of core deformations in protein superfamilies.Biophys J2005
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Collaborators

Paul Flicek
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Co-authored papers 20
Andrew D Yates
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Co-authored papers 14
Fiona Cunningham
European Bioinformatics Institute
Co-authored papers 11
Benedict Paten
UC Santa Cruz Genomics Institute, University of California
Co-authored papers 10
Sarah E Hunt
European Bioinformatics Institute
Co-authored papers 10
Adam Frankish
Co-authored papers 9
Ewan Birney
European Bioinformatics Institute
Co-authored papers 9
David Haussler
Genomics Institute, University of California Santa Cruz
Co-authored papers 7
Helen Schuilenburg
European Bioinformatics Institute
Co-authored papers 5
Tiago Grego
Co-authored papers 5
Premanand Achuthan
European Bioinformatics Institute
Co-authored papers 5
Myrto Kostadima
Co-authored papers 5
Rishi Nag
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Co-authored papers 4
Mark Diekhans
Genomics Institute, University of California Santa Cruz
Co-authored papers 4
Daniel Barrell
Oncology R&D
Co-authored papers 4
Daniel M Staines
European Bioinformatics Institute
Co-authored papers 4
Matthew R Laird
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Guy Cochrane
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Co-authored papers 3
Tim Hubbard
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Jennifer Harrow
Co-authored papers 3
John Tate
Co-authored papers 3
Stephen M J Searle
Wellcome Trust Sanger Institute
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Mark Gerstein
Yale University
Co-authored papers 2
Roderic Guig??
Barcelona Institute of Science and Technology
Co-authored papers 2
Irwin Jungreis
Broad Institute of MIT and Harvard
Co-authored papers 2
Michael L Tress
Spanish National Cancer Research Centre (CNIO)
Co-authored papers 2
Elliott H Margulies
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
Rory Johnson
Co-authored papers 2
Manolis Kellis
Massachusetts Institute of Technology
Co-authored papers 2
Ian T Fiddes
Liver Center and Diabetes Center, University of California san francisco
Co-authored papers 2
Release 1.2