Skip to Main Content

Author Details

Shane McCarthy
Wellcome Sanger Institute
2004
98
44
Wade Schulz (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37424773A chromosomal reference genome sequence for the malaria mosquito, <i>Anopheles gambiae</i>, Giles, 1902, Ifakara strain.Wellcome Open Res2024
37424773A chromosomal reference genome sequence for the malaria mosquito, <i>Anopheles gambiae</i>, Giles, 1902, Ifakara strain.Wellcome Open Res2024
36525368YaHS: yet another Hi-C scaffolding tool.Bioinformatics2023
36408616Use of Whole-Genome Sequencing to Estimate the Contribution of Immune Evasion and Waning Immunity on Decreasing COVID-19 Vaccine Effectiveness.J Infect Dis2023
38046191A chromosomal reference genome sequence for the malaria mosquito, <i>Anopheles moucheti</i>, Evans, 1925.Wellcome Open Res2023
37464285MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.BMC Bioinformatics2023
37194566Caecilian Genomes Reveal the Molecular Basis of Adaptation and Convergent Evolution of Limblessness in Snakes and Caecilians.Mol Biol Evol2023
37296119Genomics of cold adaptations in the Antarctic notothenioid fish radiation.Nat Commun2023
36533297First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies.Mol Ecol Resour2023
36525368YaHS: yet another Hi-C scaffolding tool.Bioinformatics2023
38046191A chromosomal reference genome sequence for the malaria mosquito, <i>Anopheles moucheti</i>, Evans, 1925.Wellcome Open Res2023
37464285MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.BMC Bioinformatics2023
37296119Genomics of cold adaptations in the Antarctic notothenioid fish radiation.Nat Commun2023
37194566Caecilian Genomes Reveal the Molecular Basis of Adaptation and Convergent Evolution of Limblessness in Snakes and Caecilians.Mol Biol Evol2023
36408616Use of Whole-Genome Sequencing to Estimate the Contribution of Immune Evasion and Waning Immunity on Decreasing COVID-19 Vaccine Effectiveness.J Infect Dis2023
36533297First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies.Mol Ecol Resour2023
36255239Casirivimab and Imdevimab Treatment Reduces Viral Load and Improves Clinical Outcomes in Seropositive Hospitalized COVID-19 Patients with Nonneutralizing or Borderline Neutralizing Antibodies.mBio2022
36255239Casirivimab and Imdevimab Treatment Reduces Viral Load and Improves Clinical Outcomes in Seropositive Hospitalized COVID-19 Patients with Nonneutralizing or Borderline Neutralizing Antibodies.mBio2022
34115965Pan-ancestry exome-wide association analyses of COVID-19 outcomes in 586,157 individuals.Am J Hum Genet2021
35600244The genome sequence of the European water vole, <i>Arvicola amphibius</i> Linnaeus 1758.Wellcome Open Res2021
33911273Towards complete and error-free genome assemblies of all vertebrate species.Nature2021
33590861Twelve years of SAMtools and BCFtools.Gigascience2021
34115965Pan-ancestry exome-wide association analyses of COVID-19 outcomes in 586,157 individuals.Am J Hum Genet2021
34161776The monoclonal antibody combination REGEN-COV protects against SARS-CoV-2 mutational escape in preclinical and human studies.Cell2021
33734373A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia illucens L.).G3 (Bethesda)2021
33619501Genome-wide analysis in 756,646 individuals provides first genetic evidence that <i>ACE2</i> expression influences COVID-19 risk and yields genetic risk scores predictive of severe disease.medRxiv2021
34184762Genome-wide association analysis of serum alanine and aspartate aminotransferase, and the modifying effects of BMI in 388k European individuals.Genet Epidemiol2021
34687311Correction to: A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning.Gigascience2021
34632087The genome sequence of the brown trout, <i>Salmo trutta</i> Linnaeus 1758.Wellcome Open Res2021
34671705The genome sequence of the European golden eagle, <i>Aquila chrysaetos chrysaetos</i> Linnaeus 1758.Wellcome Open Res2021
34972500Correction to: Efficient iterative Hi-C scaffolder based on N-best neighbors.BMC Bioinformatics2021
34837944Efficient iterative Hi-C scaffolder based on N-best neighbors.BMC Bioinformatics2021
34660910The genome sequence of the Norway rat, <i>Rattus norvegicus</i> Berkenhout 1769.Wellcome Open Res2021
34703904The complete genome sequence of <i>Eimeria tenella</i> (Tyzzer 1929), a common gut parasite of chickens.Wellcome Open Res2021
35600244The genome sequence of the European water vole, <i>Arvicola amphibius</i> Linnaeus 1758.Wellcome Open Res2021
33911273Towards complete and error-free genome assemblies of all vertebrate species.Nature2021
33734373A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia illucens L.).G3 (Bethesda)2021
33619501Genome-wide analysis in 756,646 individuals provides first genetic evidence that <i>ACE2</i> expression influences COVID-19 risk and yields genetic risk scores predictive of severe disease.medRxiv2021
33590861Twelve years of SAMtools and BCFtools.Gigascience2021
34972500Correction to: Efficient iterative Hi-C scaffolder based on N-best neighbors.BMC Bioinformatics2021
34671705The genome sequence of the European golden eagle, <i>Aquila chrysaetos chrysaetos</i> Linnaeus 1758.Wellcome Open Res2021
34703904The complete genome sequence of <i>Eimeria tenella</i> (Tyzzer 1929), a common gut parasite of chickens.Wellcome Open Res2021
34632087The genome sequence of the brown trout, <i>Salmo trutta</i> Linnaeus 1758.Wellcome Open Res2021
34837944Efficient iterative Hi-C scaffolder based on N-best neighbors.BMC Bioinformatics2021
34660910The genome sequence of the Norway rat, <i>Rattus norvegicus</i> Berkenhout 1769.Wellcome Open Res2021
34687311Correction to: A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning.Gigascience2021
34161776The monoclonal antibody combination REGEN-COV protects against SARS-CoV-2 mutational escape in preclinical and human studies.Cell2021
34184762Genome-wide association analysis of serum alanine and aspartate aminotransferase, and the modifying effects of BMI in 388k European individuals.Genet Epidemiol2021
32193295Insights into human genetic variation and population history from 929 diverse genomes.Science2020
31971576Identifying and removing haplotypic duplication in primary genome assemblies.Bioinformatics2020
  • 1 - 50 of 196

Recommended Authors

Stanford School of Medicine
Career Start Year 2010
Number of shared co-authors 28
Wellcome Sanger Institute
Career Start Year 2010
Number of shared co-authors 24
Berlin Institute of Health (BIH) at Charite-Universitatsmedizin Berlin
Career Start Year 2008
Number of shared co-authors 11
Duke University
Career Start Year 2007
Number of shared co-authors 26
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
Career Start Year 2007
Number of shared co-authors 53
University of Texas M.D. Anderson Cancer Center
Career Start Year 2007
Number of shared co-authors 16
Scripps Science Institute
Career Start Year 2005
Number of shared co-authors 16
Institute for Genomic Medicine, Nationwide Children's Hospital
Career Start Year 2005
Number of shared co-authors 47
The Roslin Institute, The University of Edinburgh
Career Start Year 2005
Number of shared co-authors 7
University of California San Diego
Career Start Year 2004
Number of shared co-authors 4
University of North Carolina
Career Start Year 2003
Number of shared co-authors 36
Baylor College of Medicine
Career Start Year 2002
Number of shared co-authors 40
Columbia University
Career Start Year 2002
Number of shared co-authors 32
Institute for Genomic Medicine, Columbia University
Career Start Year 2001
Number of shared co-authors 2
Baylor College of Medicine
Career Start Year 2001
Number of shared co-authors 40
University of Pennsylvania
Career Start Year 2001
Number of shared co-authors 39
Broad Institute of Harvard and MIT
Career Start Year 2001
Number of shared co-authors 57
National Human Genome Research Institute, National Institutes of Health
Career Start Year 2000
Number of shared co-authors 45
University of Michigan ann arbor
Career Start Year 1998
Number of shared co-authors 73
European Bioinformatics Institute
Career Start Year 1997
Number of shared co-authors 95
University of Washington
Career Start Year 1997
Number of shared co-authors 33
College of American Pathologists
Career Start Year 1996
Number of shared co-authors 36
Barcelona Institute of Science and Technology (BIST)
Career Start Year 1995
Number of shared co-authors 69
Institute for Systems Biology
Career Start Year 1995
Number of shared co-authors 20
Emory University School of Medicine
Career Start Year 1994
Number of shared co-authors 49
Center for Inherited Disease Research, Johns Hopkins School of Medicine
Career Start Year 1993
Number of shared co-authors 44
Rutgers University-New Brunswick, Rutgers University
Career Start Year 1989
Number of shared co-authors 9
Institute for Systems Biology
Career Start Year 1988
Number of shared co-authors 28
Baylor College of Medicine
Career Start Year 1987
Number of shared co-authors 38
University of California, USA Institute for Genomic Medicine
Career Start Year 1967
Number of shared co-authors 45

Collaborators

University of Cambridge
Co-authored papers 39
University of California San Diego
Co-authored papers 15
Wellcome Sanger Institute
Co-authored papers 11
MS Research Unit
Co-authored papers 10
Wellcome Sanger Institute
Co-authored papers 10
Co-authored papers 9
Co-authored papers 9
Regeneron Pharmaceuticals Inc.
Co-authored papers 9
Lady Davis Institute for Medical Research, Jewish General Hospital
Co-authored papers 9
Wellcome Sanger Institute
Co-authored papers 8
King's College London
Co-authored papers 7
Co-authored papers 7
University of Bristol
Co-authored papers 7
Regeneron Pharmaceuticals
Co-authored papers 7
Geisinger Medical Center
Co-authored papers 7
Co-authored papers 7
Co-authored papers 6
Co-authored papers 6
Co-authored papers 6
University of Maryland School of Medicine
Co-authored papers 6
University of Washington
Co-authored papers 6
Co-authored papers 5
Co-authored papers 5
Regeneron Pharmaceuticals, Inc.
Co-authored papers 5
Co-authored papers 5
University of Washington
Co-authored papers 5
Co-authored papers 5
Co-authored papers 5
Co-authored papers 5
Co-authored papers 5