Author details

Full Name

Blaz Zupan

Affiliation

University of Ljubljana

ORCID

Career Start Year

1998

Papers

H Index

Expertise

CM4AI Collaborator

Emma Lundberg (CM4AI)

PMID	Paper Title	Journal Title	Published Year
34183452	Transcriptional milestones in <i>Dictyostelium</i> development.	Genome Res	2021
33838303	Seroprevalence of severe acute respiratory syndrome coronavirus 2 in Slovenia: results of two rounds of a nationwide population study on a probability-based sample, challenges and lessons learned.	Clin Microbiol Infect	2021
33661899	Hands-on training about overfitting.	PLoS Comput Biol	2021
32688068	Low prevalence of active COVID-19 in Slovenia: a nationwide population study of a probability-based sample.	Clin Microbiol Infect	2020
31591416	Democratized image analytics by visual programming through integration of deep models and small-scale machine learning.	Nat Commun	2019
31185054	Fast optimization of non-negative matrix tri-factorization.	PLoS One	2019
31510695	scOrange-a tool for hands-on training of concepts from single-cell data analytics.	Bioinformatics	2019
29326223	Genome Sequence of a Lethal Strain of Xylem-Invading <i>Verticillium nonalfalfae</i>.	Genome Announc	2018
30145981	From hype to reality: data science enabling personalized medicine.	BMC Med	2018
28578698	dictyExpress: a web-based platform for sequence data management and analytics in Dictyostelium and beyond.	BMC Bioinformatics	2017
29299064	Scalable non-negative matrix tri-factorization.	BioData Min	2017
29142246	A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family.	Nat Commun	2017
26787667	Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins.	Bioinformatics	2016
27307649	Jumping across biomedical contexts using compressive data fusion.	Bioinformatics	2016
27307293	Gene discovery by chemical mutagenesis and whole-genome sequencing in Dictyostelium.	Genome Res	2016
26776175	COLLECTIVE PAIRWISE CLASSIFICATION FOR MULTI-WAY ANALYSIS OF DISEASE AND DRUG DATA.	Pac Symp Biocomput	2016
24733033	Integrative clustering by nonnegative matrix factorization can reveal coherent functional groups from gene profile data.	IEEE J Biomed Health Inform	2015
26465776	Gene Prioritization by Compressive Data Fusion and Chaining.	PLoS Comput Biol	2015
26353207	Data Fusion by Matrix Factorization.	IEEE Trans Pattern Anal Mach Intell	2015
26551454	Sieve-based relation extraction of gene regulatory networks from biological literature.	BMC Bioinformatics	2015
26072487	Gene network inference by fusing data from diverse distributions.	Bioinformatics	2015
25887420	Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum.	BMC Genomics	2015
25658751	Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion.	J Comput Biol	2015
25769804	Genome-Wide Localization Study of Yeast Pex11 Identifies Peroxisome-Mitochondria Interactions through the ERMES Complex.	J Mol Biol	2015
24490838	Assessment of machine learning reliability methods for quantifying the applicability domain of QSAR regression models.	J Chem Inf Model	2014
24964802	Heterogeneous computing architecture for fast detection of SNP-SNP interactions.	BMC Bioinformatics	2014
24752995	Computational models reveal genotype-phenotype associations in Saccharomyces cerevisiae.	Yeast	2014
24931990	Gene network inference by probabilistic scoring of relationships from a factorized model of interactions.	Bioinformatics	2014
24526010	Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.	RNA Biol	2014
24297565	Matrix factorization-based data fusion for gene function prediction in baker's yeast and slime mold.	Pac Symp Biocomput	2014
23542994	Interest propagation for knowledge extraction and representation.	Stud Health Technol Inform	2013
24232732	Discovering disease-disease associations by fusing systems-level molecular data.	Sci Rep	2013
23874393	Computational models for prediction of yeast strain potential for winemaking from phenotypic profiles.	PLoS One	2013
23967067	ABC transporters in Dictyostelium discoideum development.	PLoS One	2013
23664307	Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions.	Curr Biol	2013
23494306	Transcriptional profiling of Dictyostelium with RNA sequencing.	Methods Mol Biol	2013
22863408	Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions.	Genome Biol	2012
23417408	Knowledge-based bioinformatics for the study of mammalian oocytes.	Int J Dev Biol	2012
23417407	OCT4 and the acquisition of oocyte developmental competence during folliculogenesis.	Int J Dev Biol	2012
22934129	Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain.	Sci Rep	2012
22773076	Supporting regenerative medicine by integrative dimensionality reduction.	Methods Inf Med	2012
21358640	Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.	Nat Neurosci	2011
21810415	BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium.	Dev Biol	2011
21765096	Stage prediction of embryonic stem cell differentiation from genome-wide expression data.	Bioinformatics	2011
21846794	Analysis of alternative splicing associated with aging and neurodegeneration in the human brain.	Genome Res	2011
21559008	iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.	J Vis Exp	2011
21576219	SNPsyn: detection and exploration of SNP-SNP interactions.	Nucleic Acids Res	2011
21708977	miR669a and miR669q prevent skeletal muscle differentiation in postnatal cardiac progenitors.	J Cell Biol	2011
20092660	Does replication groups scoring reduce false positive rate in SNP interaction discovery?	BMC Genomics	2010
21048981	iCLIP predicts the dual splicing effects of TIA-RNA interactions.	PLoS Biol	2010

1 - 50 of 94

Yuanfang Guan

University of Michigan ann arbor

Career Start Year 2007

Number of shared co-authors 3

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 1

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 1

Giuseppe Jurman

Data Science for Health Research Unit, Bruno Kessler Foundation

Career Start Year 2003

Number of shared co-authors 1

Su-In Lee

University of Washington

Career Start Year 2003

Number of shared co-authors 0

Gil Alterovitz

Brigham and Women's Hospital

Career Start Year 2002

Number of shared co-authors 1

J??rg Rahnenf??hrer

TU Dortmund University

Career Start Year 2002

Number of shared co-authors 5

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 6

Alberto Pascual-Montano

National Center for Biotechnology-CSIC

Career Start Year 2001

Number of shared co-authors 1

Frank Emmert-Streib

Tampere University

Career Start Year 2000

Number of shared co-authors 0

P??draig Cunningham

University College Dublin

Career Start Year 2000

Number of shared co-authors 0

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 0

Cesare Furlanello

Bruno Kessler Foundation

Career Start Year 1996

Number of shared co-authors 1

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 1

Jaak Vilo

Institute of Computer Science, University of Tartu

Career Start Year 1996

Number of shared co-authors 2

Samuel Kaski

Aalto University

Career Start Year 1995

Number of shared co-authors 2

Dimitris Anastassiou

Columbia University

Career Start Year 1995

Number of shared co-authors 2

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Ralf Zimmer

Ludwig-Maximilians-Universitat Munchen

Career Start Year 1995

Number of shared co-authors 0

Giorgio Valentini

Universita degli Studi di Milano

Career Start Year 1995

Number of shared co-authors 3

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 11

Hiroshi Mamitsuka

Institute for Chemical Research, Kyoto University

Career Start Year 1994

Number of shared co-authors 0

Pietro Li??

University of Cambridge

Career Start Year 1994

Number of shared co-authors 1

Tommi S Jaakkola

Massachusetts Institute of Technology

Career Start Year 1992

Number of shared co-authors 0

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 4

Bart De Moor

STADIUS Center for Dynamical Systems

Career Start Year 1990

Number of shared co-authors 2

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 0

Yves A Lussier

Center for Biomedical Informatics and Biostatistics, University of Arizona

Career Start Year 1971

Number of shared co-authors 2

row(s) 1 - 30 of 30

Marinka Zitnik

Harvard Medical School

Co-authored papers 15

Riccardo Bellazzi

University of Pavia

Co-authored papers 13

Rui Chen

Co-authored papers 2

Atul J Butte

Bakar Computational Health Sciences Institute, University of California san francisco

Co-authored papers 1

James E Ferrell

Co-authored papers 1

Sa??o D??eroski

Jozef Stefan Institute

Co-authored papers 1

Lucas Pelkmans

University of Zurich

Co-authored papers 1

Ruedi Aebersold

Institute of Molecular Systems Biology, ETH Zurich

Co-authored papers 1

S??ren Brunak

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Co-authored papers 1

Garry P Nolan

Stanford University School of Medicine

Co-authored papers 1

Timothy R Hughes

University of Toronto

Co-authored papers 1

Petra Fey

Center for Genetic Medicine, Northwestern University.

Co-authored papers 1

Jos?? Manuel Calder??n-Monta??o

Faculty of Pharmacy, University of Seville

Co-authored papers 1

Mathias Uhl??n

KTH Royal Institute of Technology

Co-authored papers 1

Ronnie P-A Berntsson

Umea University

Co-authored papers 1

Siddhartha Basu

West Bengal University of Animal and Fishery Sciences

Co-authored papers 1

Megan Carter

Stockholm University

Co-authored papers 1

P??l Stenmark

Stockholm University

Co-authored papers 1

Florian Leitner

Co-authored papers 1

Yves Moreau

KU Leuven - University of Leuven

Co-authored papers 1

Chris Sander

Broad Institute of MIT and Harvard

Co-authored papers 1

Olga Loseva

Karolinska Institutet

Co-authored papers 1

Hammou Ait Blal

KTH Royal Institute of Technology

Co-authored papers 1

Thomas Helleday

The University of Sheffield

Co-authored papers 1

Nives ??kunca

ETH Zurich, Universitatstrasse 19

Co-authored papers 1

Oliver Kohlbacher

Max Planck Institute for Developmental Biology

Co-authored papers 1

Per-Henrik Edqvist

Uppsala University

Co-authored papers 1

Rainer Spang

University of Regensburg

Co-authored papers 1

Andrea Califano

Columbia University

Co-authored papers 1

Ann-Sofie Jemth

Karolinska Institutet

Co-authored papers 1

1 - 30

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