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Author Details

Denis C Shields
Conway Institute of Biomolecular and Biomedical Research, University College Dublin
1987
191
52
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37049968Relationship between Protein Digestibility and the Proteolysis of Legume Proteins during Seed Germination.Molecules2023
37836842Cell-Penetrating Milk-Derived Peptides with a Non-Inflammatory Profile.Molecules2023
36614163Modelling the Transitioning of SARS-CoV-2 nsp3 and nsp4 Lumenal Regions towards a More Stable State on Complex Formation.Int J Mol Sci2022
33436497Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications.Sci Signal2021
33684717Enriching antimicrobial peptides from milk hydrolysates using pectin/alginate food-gels.Food Chem2021
34906073Computational modelling of chromosomally clustering protein domains in bacteria.BMC Bioinformatics2021
32218953Prediction of polyproline II secondary structure propensity in proteins.R Soc Open Sci2020
33855271The future of genomics in Ireland - focus on genomics for health.HRB Open Res2020
32864787Resolving the Interactome of the Human Macrophage Immunometabolism Regulator (MACIR) with Enhanced Membrane Protein Preparation and Affinity Proteomics.Proteomics2020
30689642Computational and experimental analysis of bioactive peptide linear motifs in the integrin adhesome.PLoS One2019
31824707Implications of kappa-casein evolutionary diversity for the self-assembly and aggregation of casein micelles.R Soc Open Sci2019
31824649An intrinsically disordered proteins community for ELIXIR.F1000Res2019
31134568Computational Opportunities and Challenges in Finding Cyclic Peptide Modulators of Protein-Protein Interactions.Methods Mol Biol2019
29237089Toll-like receptor 3 L412F polymorphism promotes a persistent clinical phenotype in pulmonary sarcoidosis.QJM2018
29927052Integrating biomarkers across omic platforms: an approach to improve stratification of patients with indolent and aggressive prostate cancer.Mol Oncol2018
30224653Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.Nat Genet2018
30429575Publisher Correction: Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.Nat Genet2018
30473799Peptides derived from cadherin juxtamembrane region inhibit platelet function.R Soc Open Sci2018
29638124Casein Hydrolysate with Glycemic Control Properties: Evidence from Cells, Animal Models, and Humans.J Agric Food Chem2018
29760453Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.Nat Commun2018
29258006Genetic variants in PPARGC1B and CNTN4 are associated with thromboxane A<sub>2</sub> formation and with cardiovascular event free survival in the Anglo-Scandinavian Cardiac Outcomes Trial (ASCOT).Atherosclerosis2018
27997202Peptigram: A Web-Based Application for Peptidomics Data Visualization.J Proteome Res2017
28135244Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.Nat Genet2017
28394258Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.J Clin Invest2017
28951623Corrigendum: Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.Nat Genet2017
28739976Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.Hypertension2017
27999994Functional characterisation of the YIPF protein family in mammalian cells.Histochem Cell Biol2017
27085803ProViz-a web-based visualization tool to investigate the functional and evolutionary features of protein sequences.Nucleic Acids Res2016
27587472Meta-analysis of genome-wide association studies of HDL cholesterol response to statins.J Med Genet2016
27597145Impact of genetic variation in the 5-HT transporter and receptor on platelet function in patients with stable CAD taking aspirin.Thromb Res2016
27466198Analysis with the exome array identifies multiple new independent variants in lipid loci.Hum Mol Genet2016
25555728Computational approaches to developing short cyclic peptide modulators of protein-protein interactions.Methods Mol Biol2015
26674271SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks.F1000Res2015
26039561Design and evaluation of antimalarial peptides derived from prediction of short linear motifs in proteins related to erythrocyte invasion.PLoS One2015
25875950Discovering anti-platelet drug combinations with an integrated model of activator-inhibitor relationships, activator-activator synergies and inhibitor-inhibitor synergies.PLoS Comput Biol2015
25668361Virtual screening using combinatorial cyclic peptide libraries reveals protein interfaces readily targetable by cyclic peptides.J Chem Inf Model2015
25765234Genome-wide epistatic expression quantitative trait loci discovery in four human tissues reveals the importance of local chromosomal interactions governing gene expression.BMC Genomics2015
24472131Amino acid enrichment and compositional changes among mammalian milk proteins and the resulting nutritional consequences.J Dairy Sci2014
25231912Computational survey of peptides derived from disulphide-bonded protein loops that may serve as mediators of protein-protein interactions.BMC Bioinformatics2014
25385259Following the digestion of milk proteins from mother to baby.J Proteome Res2014
25350695Pharmacogenetic meta-analysis of genome-wide association studies of LDL cholesterol response to statins.Nat Commun2014
25108297Cadherin juxtamembrane region derived peptides inhibit TGFβ1 induced gene expression.Bioarchitecture2014
24793774In silico approaches to predict the potential of milk protein-derived peptides as dipeptidyl peptidase IV (DPP-IV) inhibitors.Peptides2014
24620897Predicting the important enzymes in human breast milk digestion.J Agric Food Chem2014
24478765Potential of known and short prokaryotic protein motifs as a basis for novel peptide-based antibacterial therapeutics: a computational survey.Front Microbiol2014
23568340SCL-Epred: a generalised de novo eukaryotic protein subcellular localisation predictor.Amino Acids2013
24064418CPPpred: prediction of cell penetrating peptides.Bioinformatics2013
23855714SLiMScape: a protein short linear motif analysis plugin for Cytoscape.BMC Bioinformatics2013
24019881Predicting binding within disordered protein regions to structurally characterised peptide-binding domains.PLoS One2013
23929743Genome-wide analysis of blood pressure variability and ischemic stroke.Stroke2013
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Collaborators

Norman E Davey
The Institute of Cancer Research
Co-authored papers 20
Patricia B Munroe
Co-authored papers 15
Mark J Caulfield
William Harvey Research Institute, Queen Mary University of London
Co-authored papers 14
Desmond J Fitzgerald
Co-authored papers 14
Nilesh J Samani
Co-authored papers 11
Pim van der Harst
Co-authored papers 9
John M C Connell
Co-authored papers 9
Bruce M Psaty
Co-authored papers 8
Jerome I Rotter
Co-authored papers 8
Christopher Newton-Cheh
Co-authored papers 8
Helen R Warren
Co-authored papers 8
Albert V Smith
University of Michigan School of Public Health ann arbor
Co-authored papers 7
Vilmundur Gudnason
Co-authored papers 7
John C Chambers
Lee Kong Chian School of Medicine, Nanyang Technological University
Co-authored papers 7
Colm O'Dushlaine
Co-authored papers 7
Andr?? G Uitterlinden
Erasmus University Medical Center
Co-authored papers 7
Joshua C Bis
Co-authored papers 7
Daniel I Chasman
Harvard Medical School, Harvard University
Co-authored papers 7
Albert Hofman
Harvard T.H. Chan School of Public Health
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Jaspal S Kooner
London NorthWest Healthcare NHS Trust
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Martin Farrall
Co-authored papers 7
Olle Melander
Co-authored papers 7
Harold Snieder
University of Groningen, University Medical Center Groningen
Co-authored papers 7
Tamara B Harris
National Institute on Aging
Co-authored papers 7
Fergal Casey
Biogen Inc.
Co-authored papers 7
Toby Johnson
Co-authored papers 7
Veikko Salomaa
Co-authored papers 6
Lenore J Launer
Co-authored papers 6
Michael R Barnes
William Harvey Research Institute, Queen Mary University of London
Co-authored papers 6
Paul M Sharp
Co-authored papers 6
Release 1.2