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Author Details

Joakim Lundeberg
KTH Royal Institute of Technology
1990
313
70
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36928528The spatial landscape of gene expression isoforms in tissue sections.Nucleic Acids Res2023
38060664Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics.Science2023
37846051Semla: a versatile toolkit for spatially resolved transcriptomics analysis and visualization.Bioinformatics2023
37789377Spatial transcriptomic analysis of virtual prostate biopsy reveals confounding effect of tissue heterogeneity on genomic signatures.Mol Cancer2023
37824650Comprehensive cell atlas of the first-trimester developing human brain.Science2023
37349575Expansion spatial transcriptomics.Nat Methods2023
37142187Single-Cell and Spatial Transcriptomic Analysis of Human Skin Delineates Intercellular Communication and Pathogenic Cells.J Invest Dermatol2023
37095395Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin.Nat Neurosci2023
36720873Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples.Nat Commun2023
36646791A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung.Nat Cell Biol2023
34845373Super-resolved spatial transcriptomics by deep data fusion.Nat Biotechnol2022
35726057Identification of early neurodegenerative pathways in progressive multiple sclerosis.Nat Neurosci2022
36462502B cell expansion hinders the stroma-epithelium regenerative cross talk during mucosal healing.Immunity2022
35868280SnapShot: Spatial transcriptomics.Cell2022
35948708Spatially resolved clonal copy number alterations in benign and malignant tissue.Nature2022
36115838Spatio-temporal analysis of prostate tumors in situ suggests pre-existence of treatment-resistant clones.Nat Commun2022
35149721The spatial transcriptomic landscape of the healing mouse intestine following damage.Nat Commun2022
35210624Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics.Nat Neurosci2022
35086829The discovAIR project: a roadmap towards the Human Lung Cell Atlas.Eur Respir J2022
34906508Novel loss-of-function variant in DENND5A impedes melanosomal cargo transport and predisposes to familial cutaneous melanoma.Genet Med2022
33349521The impact of gastrointestinal dysmotility on the aerodigestive microbiome of pediatric lung transplant recipients.J Heart Lung Transplant2021
33704427sepal: identifying transcript profiles with spatial patterns by diffusion-based modeling.Bioinformatics2021
34857782Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver.Nat Commun2021
34493872A single-cell and spatially resolved atlas of human breast cancers.Nat Genet2021
34638322Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer.Cancers (Basel)2021
34650042Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions.Nat Commun2021
33408402Spatially resolved transcriptomics adds a new dimension to genomics.Nat Methods2021
33420318The spatial RNA integrity number assay for in situ evaluation of transcriptome quality.Commun Biol2021
31616045Genes and variants in hematopoiesis-related pathways are associated with gemcitabine/carboplatin-induced thrombocytopenia.Pharmacogenomics J2020
33088423Deconstructing tumor heterogeneity: the stromal perspective.Oncotarget2020
33083725Spatial Transcriptomics Reveals Genes Associated with Dysregulated Mitochondrial Functions and Stress Signaling in Alzheimer Disease.iScience2020
33363532Single-Stranded Oligonucleotide-Mediated Inhibition of Respiratory Syncytial Virus Infection.Front Immunol2020
33037292Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography.Commun Biol2020
32946785Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma.Cell2020
32664861Seamless integration of image and molecular analysis for spatial transcriptomics workflows.BMC Genomics2020
32579974Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma.Cell2020
33004487A latent lineage potential in resident neural stem cells enables spinal cord repair.Science2020
32637622Molecular atlas of the adult mouse brain.Sci Adv2020
32573704Transcriptional output, cell-type densities, and normalization in spatial transcriptomics.J Mol Cell Biol2020
32683206Genetic association of gemcitabine/carboplatin-induced leukopenia and neutropenia in non-small cell lung cancer patients using whole-exome sequencing.Lung Cancer2020
32572199Integrating spatial gene expression and breast tumour morphology via deep learning.Nat Biomed Eng2020
32702314Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer's Disease.Cell2020
32839457Whole-genome sequencing and gene network modules predict gemcitabine/carboplatin-induced myelosuppression in non-small cell lung cancer patients.NPJ Syst Biol Appl2020
32363691Spatially Resolved Transcriptomes-Next Generation Tools for Tissue Exploration.Bioessays2020
32349652SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation.BMC Bioinformatics2020
32293264Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues.BMC Genomics2020
30816197Transcriptomics of cardiac biopsies reveals differences in patients with or without diagnostic parameters for heart failure with preserved ejection fraction.Sci Rep2019
31835037A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.Cell2019
31501547High-definition spatial transcriptomics for in situ tissue profiling.Nat Methods2019
31572376A Single-Stranded Oligonucleotide Inhibits Toll-Like Receptor 3 Activation and Reduces Influenza A (H1N1) Infection.Front Immunol2019
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Collaborators

Mathias Uhl??n
KTH Royal Institute of Technology
Co-authored papers 76
Fredrik Pont??n
Uppsala University
Co-authored papers 30
Peter Nilsson
Linkoping University
Co-authored papers 25
Jacob Odeberg
The Arctic University of Norway
Co-authored papers 22
Max K??ller
KTH Royal Institute of Technology
Co-authored papers 16
Joseph Bergenstr??hle
KTH Royal Institute of Technology
Co-authored papers 15
Cecilia Williams
Karolinska Institutet
Co-authored papers 14
Beata Werne Solnestam
Karolinska Institutet Science Park
Co-authored papers 12
Johan Lindberg
Karolinska Institute
Co-authored papers 11
Anna Asplund
Uppsala University
Co-authored papers 10
Henrik Stranneheim
Karolinska Institutet
Co-authored papers 9
Michaela Asp
KTH Royal Institute of Technology
Co-authored papers 7
Daniel Klevebring
Karolinska Institutet
Co-authored papers 6
Emma Lundberg (CM4AI)
Stanford University
Co-authored papers 6
Olof Emanuelsson
KTH Royal Institute of Technology
Co-authored papers 6
Mikael Huss
Stockholm University
Co-authored papers 6
Sverker Lundin
Royal Institute of Technology
Co-authored papers 6
??sa Sivertsson
KTH-Royal Institute of Technology
Co-authored papers 6
Mostafa Ronaghi
Co-authored papers 6
Per-Ake Nygren
Royal Institute of Technology
Co-authored papers 5
Sten Linnarsson
Karolinska Institute
Co-authored papers 5
Xes??s M Abalo
KTH Royal Institute of Technology
Co-authored papers 5
Andrey Alexeyenko
Karolinska Institutet
Co-authored papers 5
Pelin Akan
KTH Royal Institute of Technology
Co-authored papers 5
Reza Mirzazadeh
KTH Royal Institute of Technology
Co-authored papers 5
Mats Nilsson
Stockholm University
Co-authored papers 4
Erik Sundstr??m
Karolinska Institutet
Co-authored papers 4
Lars Klareskog
Co-authored papers 4
Sara Str??mberg
Uppsala University
Co-authored papers 4
Sophia Hober
KTH Royal Institute of Technology
Co-authored papers 4
Release 1.2