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Author Details

N??ria Queralt-Rosinach
Leiden University Medical Center
1999
27
15
PMIDPaper TitleJournal TitlePublished Year
38082345The use of foundational ontologies in biomedical research.J Biomed Semantics2023
35292119Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data.J Biomed Semantics2022
35616100A Simple Standard for Sharing Ontological Mappings (SSSOM).Database (Oxford)2022
35705716The GA4GH Phenopacket schema defines a computable representation of clinical data.Nat Biotechnol2022
35468846Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic.J Biomed Semantics2022
35561182Design and application of a knowledge network for automatic prioritization of drug mechanisms.Bioinformatics2022
32180547Wikidata as a knowledge graph for the life sciences.Elife2020
32634871A proof-of-concept study of extracting patient histories for rare/intractable diseases from social media.Genomics Inform2020
32283553Structured reviews for data and knowledge-driven research.Database (Oxford)2020
32308977BioHackathon 2015: Semantics of data for life sciences and reproducible research.F1000Res2020
31829175Time-resolved evaluation of compound repositioning predictions on a text-mined knowledge network.BMC Bioinformatics2019
27924018DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants.Nucleic Acids Res2017
28449114Neuro-symbolic representation learning on biological knowledge graphs.Bioinformatics2017
29214177Linked Registries: Connecting Rare Diseases Patient Registries through a Semantic Web Layer.Biomed Res Int2017
27153650DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases.Bioinformatics2016
27774140Open PHACTS computational protocols for <i>in silico</i> target validation of cellular phenotypic screens: knowing the knowns.Medchemcomm2016
25877637DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes.Database (Oxford)2015
25886734Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research.BMC Bioinformatics2015
24602174The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery.J Biomed Semantics2014
24839601A knowledge-driven approach to extract disease-related biomarkers from the literature.Biomed Res Int2014
20364341A canonical cation-Ï¿ interaction stabilizes the agonist conformation of estrogen-like nuclear receptors.Eur Biophys J2010
17999383On the applicability of multireference second-order perturbation theory to study weak magnetic coupling in molecular complexes.J Comput Chem2008
17401696Analysis of the survival of H. pylori within a laboratory-based aquatic model system using molecular and classical techniques.Microb Ecol2007
15752335Detection of Helicobacter pylori DNA in human faeces and water with different levels of faecal pollution in the north-east of Spain.J Appl Microbiol2005
12567237Homogeneity of the morphological groups of bacteriophages infecting Bacteroides fragilis strain HSP40 and strain RYC2056.Curr Microbiol2003
11311351Optimisation and standardisation of a method for detecting and enumerating bacteriophages infecting Bacteroides fragilis.J Virol Methods2001
10103280Diversity of bacteroides fragilis strains in their capacity to recover phages from human and animal wastes and from fecally polluted wastewater.Appl Environ Microbiol1999
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Collaborators

Laura I Furlong
Hospital del Mar Research Institute (IMIM), Pompeu Fabra University (UPF)
Co-authored papers 7
Rajaram Kaliyaperumal
Leiden University Medical Center
Co-authored papers 4
Ferran Sanz
Hospital del Mar Medical Research Institute (IMIM), Pompeu Fabra University
Co-authored papers 4
Andrew I Su
The Scripps Research Institute
Co-authored papers 4
Marco Roos
Leiden University Medical Center
Co-authored papers 4
Robert Hoehndorf
King Abdullah University of Science and Technology
Co-authored papers 3
Mark D Wilkinson
Universidad Politecnica de Madrid (UPM)
Co-authored papers 3
Michel Dumontier
Institute of Data Science, Maastricht University
Co-authored papers 3
Benjamin M Good
Lawrence Berkeley National Laboratory
Co-authored papers 2
Peter N Robinson
William Harvey Research Institute, Queen Mary University of London
Co-authored papers 2
Tim Putman
University of Colorado
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Alex H Wagner
Iowa State University, Mayo Clinic, Nationwide Children's Hospital, The Ohio State University College of Medicine, University of Iowa, Washington University in Saint Louis
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Chris T Evelo
Maastricht University
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Tudor Groza
Perth Children's Hospital
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Christopher J Mungall
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
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Jordi Deu-Pons
Institute for Research in Biomedicine
Co-authored papers 2
Christopher G Chute
Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota
Co-authored papers 2
Nomi L Harris
Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
Co-authored papers 2
Nicole Vasilevsky
Critical Path Institute
Co-authored papers 2
Melissa A Haendel
Co-authored papers 2
Tiffany J Callahan
Columbia University
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Mark Thompson
Leiden University Medical Center
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Soichi Ogishima
Tohoku University Graduate School of Medicine
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Barend Mons
Leiden University Medical Center
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Gregory S Stupp
The Scripps Research Institute
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Monica C Munoz-Torres
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Julie A McMurry
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Melissa A Haendel
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Release 1.2