Author details

Full Name

Beifang Niu

Affiliation

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36722149	Long-term response to sintilimab, bevacizumab and chemotherapy in heavily pretreated microsatellite stable colon cancer.		2023
37643197	Identification of MKI67, TPR , and TCHH Mutations as Prognostic Biomarkers for Patients With Defective Mismatch Repair Colon Cancer Stage II/III.		2023
36910641	Development and validation of a mutation-based model to predict immunotherapeutic efficacy in NSCLC.		2023
36647794	Long-term response to camrelizumab in a pretreated metastatic mixed testicular germ-cell tumor patient with co-mutations in DNA damage-repair genes.		2023
37330158	RabbitQCPlus 2.0: More efficient and versatile quality control for sequencing data.	Methods	2023
37198663	RabbitTClust: enabling fast clustering analysis of millions of bacteria genomes with MinHash sketches.	Genome Biol	2023
36817153	Persistent response of furmonertinib plus anlotinib in a lung adenocarcinoma patient with an EGFR exon 20 insertion mutation: A case report.		2023
37456262	Case Report: SMARCA4 (BRG1)-deficient undifferentiated carcinoma of gallbladder with genetic analysis.		2023
36712886	Single-cell RNA sequencing reveals intratumoral heterogeneity and potential mechanisms of malignant progression in prostate cancer with perineural invasion.		2022
35648195	Complete and durable response to crizotinib in a patient with malignant pleural mesothelioma harboring CD74-ROS1 fusion.	Journal of Cancer Research and Clinical Oncology	2022
35576916	Dramatic response to local radiotherapy in a refractory metastatic mediastinal yolk sac tumor patient harboring a germline frameshift mutation: a case report.	Cancer Biology and Therapy	2022
35864747	Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen-use efficiency in the wheat cultivar Kenong 9204.	Molecular Plant	2022
36058206	OncoPubMiner: a platform for mining oncology publications.	Briefings in Bioinformatics	2022
35924172	Prognostic Roles of ceRNA Network-Based Signatures in Gastrointestinal Cancers.	Front Oncol	2022
34786890	ATG7 Promotes Bladder Cancer Invasion via Autophagy-Mediated Increased ARHGDIB mRNA Stability.	Advanced Science	2021
34168993	DIVIS: Integrated and Customizable Pipeline for Cancer Genome Sequencing Analysis and Interpretation.	Frontiers in Oncology	2021
33851200	Comprehensive review and evaluation of computational methods for identifying FLT3-internal tandem duplication in acute myeloid leukaemia.	Brief Bioinform	2021
33461213	MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data.	Brief Bioinform	2021
32790850	RabbitQC: high-speed scalable quality control for sequencing data.	Bioinformatics	2021
32510555	Comprehensive fundamental somatic variant calling and quality management strategies for human cancer genomes.	Briefings in Bioinformatics	2021
32582273	Red Blood Cells as Potential Repositories of MicroRNAs in the Circulatory System.	Frontiers in Genetics	2020
32315389	HotSpot3D web server: an integrated resource for mutation analysis in protein 3D structures.		2020
31805369	How Big Data and High-performance Computing Drive Brain Science.		2019
31917259	Gclust: A Parallel Clustering Tool for Microbial Genomic Data.		2019
29507395	Pan-cancer analysis of somatic mutations across 21 neuroendocrine tumor types.	Cell Res	2018
30154732	Different Erythrocyte MicroRNA Profiles in Low- and High-Altitude Individuals.	Frontiers in Physiology	2018
28065898	MetaSpark: a spark-based distributed processing tool to recruit metagenomic reads to reference genomes.		2017
28348404	Proteogenomic integration reveals therapeutic targets in breast cancer xenografts.	Nat Commun	2017
28747753	Corrigendum: Protein-structure-guided discovery of functional mutations across 19 cancer types.	Nat Genet	2017
28522612	GenomeVIP: a cloud platform for genomic variant discovery and interpretation.	Genome Res	2017
28440318	Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts.	Nat Commun	2017
26657142	Systematic discovery of complex insertions and deletions in human cancers.	Nat Med	2016
27294619	Protein-structure-guided discovery of functional mutations across 19 cancer types.	Nat Genet	2016
27339696	Divergent viral presentation among human tumors and adjacent normal tissues.	Sci Rep	2016
26689913	Patterns and functional implications of rare germline variants across 12 cancer types.	Nat Commun	2015
25501392	Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes.	Nat Genet	2015
25109877	Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin.	Cell	2014
24371154	MSIsensor: microsatellite instability detection using paired tumor-normal sequence data.	Bioinformatics	2014
23044549	MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data.	Bioinformatics	2013
23972288	BreakTrans: uncovering the genomic architecture of gene fusions.	Genome Biol	2013
24132290	Mutational landscape and significance across 12 major cancer types.	Nature	2013
23443460	Clonal diversity of recurrently mutated genes in myelodysplastic syndromes.	Leukemia	2013
23060610	CD-HIT: accelerated for clustering the next-generation sequencing data.	Bioinformatics	2012
22772836	Ultrafast clustering algorithms for metagenomic sequence analysis.	Brief Bioinform	2012
21899761	WebMGA: a customizable web server for fast metagenomic sequence analysis.	BMC Genomics	2011
21505035	FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes.	Bioinformatics	2011
20053844	CD-HIT Suite: a web server for clustering and comparing biological sequences.	Bioinformatics	2010
20388221	Artificial and natural duplicates in pyrosequencing reads of metagenomic data.	BMC Bioinformatics	2010