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Author Details

Yongqun He
University of Michigan Medical School ann arbor
2000
182
39
PMIDPaper TitleJournal TitlePublished Year
37953324The Human Phenotype Ontology in 2024: phenotypes around the world.Nucleic Acids Res2024
37956847Impact of heat on emergency hospital admissions related to kidney diseases in Texas: Uncovering racial disparities.Sci Total Environ2024
37953324The Human Phenotype Ontology in 2024: phenotypes around the world.Nucleic Acids Res2024
37956847Impact of heat on emergency hospital admissions related to kidney diseases in Texas: Uncovering racial disparities.Sci Total Environ2024
36704612Editorial: Host cellular responses to viruses.Front Microbiol2023
37749267Killing tumor-associated bacteria with a liposomal antibiotic generates neoantigens that induce anti-tumor immune responses.Nat Biotechnol2023
38076796Vaxign-DL: A Deep Learning-based Method for Vaccine Design and its Evaluation.bioRxiv2023
36704612Editorial: Host cellular responses to viruses.Front Microbiol2023
37131278Geographic and Temporal Trends in COVID-Associated Acute Kidney Injury in the National COVID Cohort Collaborative.Clin J Am Soc Nephrol2023
37180100VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.Front Immunol2023
37161560Big knowledge visualization of the COVID-19 CIDO ontology evolution.BMC Med Inform Decis Mak2023
38076796Vaxign-DL: A Deep Learning-based Method for Vaccine Design and its Evaluation.bioRxiv2023
37749267Killing tumor-associated bacteria with a liposomal antibiotic generates neoantigens that induce anti-tumor immune responses.Nat Biotechnol2023
37161560Big knowledge visualization of the COVID-19 CIDO ontology evolution.BMC Med Inform Decis Mak2023
37180100VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.Front Immunol2023
37131278Geographic and Temporal Trends in COVID-Associated Acute Kidney Injury in the National COVID Cohort Collaborative.Clin J Am Soc Nephrol2023
34784028Vaccine Design by Reverse Vaccinology and Machine Learning.Methods Mol Biol2022
35964149Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs.J Biomed Semantics2022
35649389COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning.Brief Bioinform2022
36093355COVID-19-associated AKI in hospitalized US patients: incidence, temporal trends, geographical distribution, risk factors and mortality.medRxiv2022
35952542Mass spectrometry-based immunopeptidomics and computational vaccinology strategies for the identification of universal Shigella immunogenic candidates.Comput Biol Med2022
35574378Prediction of Pathogenic Factors in Dysbiotic Gut Microbiomes of Colorectal Cancer Patients Using Reverse Microbiomics.Front Oncol2022
35814246Profiling COVID-19 Vaccine Adverse Events by Statistical and Ontological Analysis of VAERS Case Reports.Front Pharmacol2022
35437726Development and Applications of Interoperable Biomedical Ontologies for Integrative Data and Knowledge Representation and Multiscale Modeling in Systems Medicine.Methods Mol Biol2022
35675394A reference tissue atlas for the human kidney.Sci Adv2022
35979481Editorial: Omics approach to study the biology and virulence of microorganisms causing zoonotic diseases.Front Microbiol2022
36411908OAE-based data mining and modeling analysis of adverse events associated with three licensed HPV vaccines.Heliyon2022
35401219Ontology-Based Classification and Analysis of Adverse Events Associated With the Usage of Chloroquine and Hydroxychloroquine.Front Pharmacol2022
36591248A new framework for host-pathogen interaction research.Front Immunol2022
37324543A community effort for COVID-19 Ontology Harmonization.CEUR Workshop Proc2022
34784028Vaccine Design by Reverse Vaccinology and Machine Learning.Methods Mol Biol2022
35155491Differential COVID-19 Symptoms Given Pandemic Locations, Time, and Comorbidities During the Early Pandemic.Front Med (Lausanne)2022
35649389COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning.Brief Bioinform2022
35675394A reference tissue atlas for the human kidney.Sci Adv2022
35437726Development and Applications of Interoperable Biomedical Ontologies for Integrative Data and Knowledge Representation and Multiscale Modeling in Systems Medicine.Methods Mol Biol2022
35401219Ontology-Based Classification and Analysis of Adverse Events Associated With the Usage of Chloroquine and Hydroxychloroquine.Front Pharmacol2022
35574378Prediction of Pathogenic Factors in Dysbiotic Gut Microbiomes of Colorectal Cancer Patients Using Reverse Microbiomics.Front Oncol2022
35814246Profiling COVID-19 Vaccine Adverse Events by Statistical and Ontological Analysis of VAERS Case Reports.Front Pharmacol2022
37324543A community effort for COVID-19 Ontology Harmonization.CEUR Workshop Proc2022
36591248A new framework for host-pathogen interaction research.Front Immunol2022
36411908OAE-based data mining and modeling analysis of adverse events associated with three licensed HPV vaccines.Heliyon2022
35964149Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs.J Biomed Semantics2022
36093355COVID-19-associated AKI in hospitalized US patients: incidence, temporal trends, geographical distribution, risk factors and mortality.medRxiv2022
35952542Mass spectrometry-based immunopeptidomics and computational vaccinology strategies for the identification of universal Shigella immunogenic candidates.Comput Biol Med2022
35979481Editorial: Omics approach to study the biology and virulence of microorganisms causing zoonotic diseases.Front Microbiol2022
35155491Differential COVID-19 Symptoms Given Pandemic Locations, Time, and Comorbidities During the Early Pandemic.Front Med (Lausanne)2022
33441564Ontological modeling and analysis of experimentally or clinically verified drugs against coronavirus infection.Sci Data2021
33972411COVID-19 induces lower levels of IL-8, IL-10, and MCP-1 than other acute CRS-inducing diseases.Proc Natl Acad Sci U S A2021
34127650Potential transmission chains of variant B.1.1.7 and co-mutations of SARS-CoV-2.Cell Discov2021
33637194Rationale and design of the Kidney Precision Medicine Project.Kidney Int2021
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Collaborators

College of Literature, University of Michigan ann arbor
Co-authored papers 42
University of Michigan Medical School ann arbor
Co-authored papers 30
School of Pharmaceutical Sciences, Sun Yat-sen University
Co-authored papers 19
University of Pennsylvania Perelman School of Medicine
Co-authored papers 17
The University of Texas Health Science Center at Houston
Co-authored papers 11
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 10
Co-authored papers 9
University at Buffalo
Co-authored papers 9
University at Buffalo
Co-authored papers 8
Baylor College of Medicine
Co-authored papers 7
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 7
American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
Co-authored papers 7
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Co-authored papers 6
Co-authored papers 6
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 6
University of Michigan Medical School ann arbor
Co-authored papers 5
Ontario Institute for Cancer Research
Co-authored papers 5
European Bioinformatics Institute
Co-authored papers 5
Duke University School of Medicine
Co-authored papers 5
Washington University School of Medicine
Co-authored papers 4
William Harvey Research Institute, Queen Mary University of London
Co-authored papers 4
and School of Public Health, University of Michigan ann arbor
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Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 4
University of Colorado Anschutz Medical Campus
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University of Georgia
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Oregon Health and Science University
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University of Washington School of Medicine
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Mayo Clinic Rochester Minnesota USA.
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Oregon Health & Science University
Co-authored papers 3