Author details

Full Name

Jaclyn N Taroni

Affiliation

Alex's Lemonade Stand Foundation

ORCID

Career Start Year

2013

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37235472	Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.	Cell Rep	2023
37248386	Machine learning in rare disease.	Nat Methods	2023
37235472	Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.	Cell Rep	2023
37492101	OpenPBTA: The Open Pediatric Brain Tumor Atlas.	Cell Genom	2023
37492101	OpenPBTA: The Open Pediatric Brain Tumor Atlas.	Cell Genom	2023
37248386	Machine learning in rare disease.	Nat Methods	2023
35143491	Ten simple rules for large-scale data processing.	PLoS Comput Biol	2022
35760813	GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.	Nat Commun	2022
35143491	Ten simple rules for large-scale data processing.	PLoS Comput Biol	2022
35760813	GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.	Nat Commun	2022
33789113	Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.	Cell Rep	2021
33789113	Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.	Cell Rep	2021
33317447	annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.	BMC Bioinformatics	2020
32098059	Integrative Analysis Identifies Candidate Tumor Microenvironment and Intracellular Signaling Pathways that Define Tumor Heterogeneity in NF1.	Genes (Basel)	2020
33317447	annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.	BMC Bioinformatics	2020
32098059	Integrative Analysis Identifies Candidate Tumor Microenvironment and Intracellular Signaling Pathways that Define Tumor Heterogeneity in NF1.	Genes (Basel)	2020
31121115	MultiPLIER: A Transfer Learning Framework for Transcriptomics Reveals Systemic Features of Rare Disease.	Cell Syst	2019
31431510	Making Workshops Work: Insights from EDAMAME.	mSystems	2019
31121115	MultiPLIER: A Transfer Learning Framework for Transcriptomics Reveals Systemic Features of Rare Disease.	Cell Syst	2019
31431510	Making Workshops Work: Insights from EDAMAME.	mSystems	2019
29311282	A Multimodal Strategy Used by a Large c-di-GMP Network.	J Bacteriol	2018
29724730	Metabolic pathways and immunometabolism in rare kidney diseases.	Ann Rheum Dis	2018
29311282	A Multimodal Strategy Used by a Large c-di-GMP Network.	J Bacteriol	2018
29391252	Mycophenolate Mofetil Treatment of Systemic Sclerosis Reduces Myeloid Cell Numbers and Attenuates the Inflammatory Gene Signature in Skin.	J Invest Dermatol	2018
30815180	Integrated machine learning pipeline for aberrant biomarker enrichment (i-mAB): characterizing clusters of differentiation within a compendium of systemic lupus erythematosus patients.	AMIA Annu Symp Proc	2018
30815180	Integrated machine learning pipeline for aberrant biomarker enrichment (i-mAB): characterizing clusters of differentiation within a compendium of systemic lupus erythematosus patients.	AMIA Annu Symp Proc	2018
29391252	Mycophenolate Mofetil Treatment of Systemic Sclerosis Reduces Myeloid Cell Numbers and Attenuates the Inflammatory Gene Signature in Skin.	J Invest Dermatol	2018
29724730	Metabolic pathways and immunometabolism in rare kidney diseases.	Ann Rheum Dis	2018
28011145	A Functional Genomic Meta-Analysis of Clinical Trials in Systemic Sclerosis: TowardÂ Precision Medicine and Combination Therapy.	J Invest Dermatol	2017
28330499	A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis.	Genome Med	2017
29520335	The mechanistic implications of gene expression studies in SSc: Insights from Systems Biology.	Curr Treatm Opt Rheumatol	2017
28011145	A Functional Genomic Meta-Analysis of Clinical Trials in Systemic Sclerosis: TowardÂ Precision Medicine and Combination Therapy.	J Invest Dermatol	2017
28330499	A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis.	Genome Med	2017
29520335	The mechanistic implications of gene expression studies in SSc: Insights from Systems Biology.	Curr Treatm Opt Rheumatol	2017
26945694	Identification of Optimal Mouse Models of Systemic Sclerosis by Interspecies Comparative Genomics.	Arthritis Rheumatol	2016
26801089	Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis.	Arthritis Res Ther	2016
26945694	Identification of Optimal Mouse Models of Systemic Sclerosis by Interspecies Comparative Genomics.	Arthritis Rheumatol	2016
26801089	Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis.	Arthritis Res Ther	2016
25607805	Experimentally-derived fibroblast gene signatures identify molecular pathways associated with distinct subsets of systemic sclerosis patients in three independent cohorts.	PLoS One	2015
25569146	Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms.	PLoS Comput Biol	2015
25607805	Experimentally-derived fibroblast gene signatures identify molecular pathways associated with distinct subsets of systemic sclerosis patients in three independent cohorts.	PLoS One	2015
26220546	Molecular characterization of systemic sclerosis esophageal pathology identifies inflammatory and proliferative signatures.	Arthritis Res Ther	2015
26220546	Molecular characterization of systemic sclerosis esophageal pathology identifies inflammatory and proliferative signatures.	Arthritis Res Ther	2015
25569146	Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms.	PLoS Comput Biol	2015
23426913	Roles of mouse sperm-associated alpha-L-fucosidases in fertilization.	Mol Reprod Dev	2013
23426913	Roles of mouse sperm-associated alpha-L-fucosidases in fertilization.	Mol Reprod Dev	2013

1 - 46 of 46

Brandon L Tsai

University of California los angeles

Career Start Year 2017

Number of shared co-authors 0

Hailiang Mei

Leiden University Medical Center

Career Start Year 2014

Number of shared co-authors 1

David L Gibbs

Institute for Systems Biology

Career Start Year 2013

Number of shared co-authors 1

Zichen Wang

Icahn School of Medicine at Mount Sinai

Career Start Year 2013

Number of shared co-authors 0

Enrico Ferrero

Novartis Institutes for BioMedical Research

Career Start Year 2011

Number of shared co-authors 2

David Gomez-Cabrero

King Abdullah University of Science and Technology

Career Start Year 2010

Number of shared co-authors 4

Kathleen M Fisch

Center for Computational Biology and Bioinformatics, University of California

Career Start Year 2009

Number of shared co-authors 0

Wei Zhu

Georgia Cancer Center, Medical College of Georgia

Career Start Year 2008

Number of shared co-authors 0

James A Eddy

Benaroya Research Institute at Virginia Mason, Institute for Systems Biology, Sage Bionetworks, University of Illinois at Urbana-Champaign

Career Start Year 2008

Number of shared co-authors 3

Brandon W Higgs

Translational and Clinical Data Sciences

Career Start Year 2006

Number of shared co-authors 1

Hai Fang

University of Bristol

Career Start Year 2006

Number of shared co-authors 3

Yihong Yao

Cellular Biomedicine Group Inc.

Career Start Year 2005

Number of shared co-authors 0

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 0

Shannan J Ho Sui

Harvard T.H. Chan School of Public Health

Career Start Year 2004

Number of shared co-authors 0

Efthymios Motakis

Yong Loo Lin School of Medicine, National University of Singapore

Career Start Year 2004

Number of shared co-authors 0

Purvesh Khatri

University of California San Francisco

Career Start Year 2002

Number of shared co-authors 5

Shouguo Gao

and Blood Institute, National Institutes of Health

Career Start Year 2001

Number of shared co-authors 1

Jean Yee Hwa Yang

The University of Sydney

Career Start Year 2001

Number of shared co-authors 1

Mikhail G Dozmorov

Virginia Commonwealth University

Career Start Year 2001

Number of shared co-authors 0

David K Crossman

University of Alabama at Birmingham

Career Start Year 2000

Number of shared co-authors 1

Hedi Peterson

Institute of Computer Science, University of Tartu

Career Start Year 2000

Number of shared co-authors 1

Peter A C 't Hoen

Radboud University Medical Center

Career Start Year 1998

Number of shared co-authors 0

Shannon K McWeeney

Oregon Health & Science University, University of California Berkeley

Career Start Year 1997

Number of shared co-authors 7

Soumya Raychaudhuri

Brigham and Women's Hospital and Harvard Medical School

Career Start Year 1996

Number of shared co-authors 3

Andreas Scherer

Institute for Molecular Medicine Finland (FIMM), University of Helsinki

Career Start Year 1995

Number of shared co-authors 2

Atul J Butte

Bakar Computational Health Sciences Institute, University of California san francisco

Career Start Year 1993

Number of shared co-authors 0

Christine A Wells

The University of Melbourne

Career Start Year 1989

Number of shared co-authors 0

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 2

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 0

Rainer Spang

University of Regensburg

Career Start Year 1969

Number of shared co-authors 0

row(s) 1 - 30 of 30

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 12

Michael L Whitfield

Geisel School of Medicine at Dartmouth

Co-authored papers 9

John M Mahoney

Larner College of Medicine, University of Vermont

Co-authored papers 6

Casey S Greene

Co-authored papers 5

Monique Hinchcliff

Yale School of Medicine

Co-authored papers 5