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Author Details

David A Ray
2002
93
36
PMIDPaper TitleJournal TitlePublished Year
36658436A high-quality Ixodes scapularis genome advances tick science.2023
37822944The evolution of antimicrobial peptides in Chiroptera.2023
37071810Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia.Mol Biol Evol2023
37104599Evolutionary constraint and innovation across hundreds of placental mammals.Science2023
35327953SINE-Based Phylogenomics Reveal Extensive Introgression and Incomplete Lineage Sorting in .Genes2022
36099283Comparison of genetic variation between rare and common congeners of Dipodomys with estimates of contemporary and historical effective population size.PLoS ONE2022
36290385Paramutation-like Epigenetic Conversion by piRNA at the Telomere of .Biology2022
36013369Transposable Elements in Bats Show Differential Accumulation Patterns Determined by Class and Functionality.Life (Basel)2022
35627151Contradictory Phylogenetic Signals in the Laurasiatheria Anomaly Zone.Genes (Basel)2022
35064043The PIWI/piRNA response is relaxed in a rodent that lacks mobilizing transposable elements.RNA2022
34760405Evolutionary history of the vertebrate Piwi gene family.PeerJ2021
34146369Large-scale genome sampling reveals unique immunity and metabolic adaptations in bats.Mol Ecol2021
32699395Six reference-quality genomes reveal evolution of bat adaptations.Nature2020
31909812Differential Expression in Testis and Liver Transcriptomes from Four Species of Peromyscus (Rodentia: Cricetidae).Genome Biology and Evolution2020
32075855A High-Quality Genome Assembly of the North American Song Sparrow, .G3: Genes, Genomes, Genetics2020
31821505A High-Quality Reference Genome Assembly of the Saltwater Crocodile, Crocodylus porosus, Reveals Patterns of Selection in Crocodylidae.Genome Biology and Evolution2020
32485163Identification and characterization of microRNAs (miRNAs) and their transposable element origins in the saltwater crocodile, Crocodylus porosus.Analytical Biochemistry2020
31214686Simultaneous TE Analysis of 19 Heliconiine Butterflies Yields Novel Insights into Rapid TE-Based Genome Diversification and Multiple SINE Births and Deaths.Genome Biology and Evolution2019
31671501The 2019 FASEB Science Research Conference on The Mobile DNA Conference: 25 Years of Discussion and Research, June 23-28, Palm Springs, California, USA.FASEB J2019
30445649True Homoplasy of Retrotransposon Insertions in Primates.Systematic Biology2019
29166127Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species.Annu Rev Anim Biosci2018
28945862Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats.Systematic Biology2018
29392473Mammalian transposable elements and their impacts on genome evolution.Chromosome Research2018
28137821Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.Genome Res2017
28158585Evolution and Diversity of Transposable Elements in Vertebrate Genomes.Genome Biology and Evolution2017
27489570Pinpointing the vesper bat transposon revolution using the Miniopterus natalensis genome.Mobile DNA2016
27060702Transposable Element Targeting by piRNAs in Laurasiatherians with Distinct Transposable Element Histories.Genome Biology and Evolution2016
26802115Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies.Genome Biology and Evolution2016
26865070Contrasting Patterns of Evolutionary Diversification in the Olfactory Repertoires of Reptile and Bird Genomes.Genome Biol Evol2016
27793085Genome sequence of Phormia regina Meigen (Diptera: Calliphoridae): implications for medical, veterinary and forensic research.BMC Genomics2016
25991928Differential SINE evolution in vesper and non-vesper bats.Mobile DNA2015
25451744A 454 sequencing approach to dipteran mitochondrial genome research.Genomics2015
26904375Transposable elements and small RNAs: Genomic fuel for species diversity.Mobile Genetic Elements2015
26014613Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis.Genome Biol Evol2015
24692655Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats.Molecular Biology and Evolution2014
25504731Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.Science2014
25504713Whole-genome analyses resolve early branches in the tree of life of modern birds.Science2014
25504712Comparative genomics reveals insights into avian genome evolution and adaptation.Science2014
25503521Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC.PLoS One2014
25503085Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes.Genome Biol Evol2014
25501991Early mesozoic coexistence of amniotes and hepadnaviridae.PLoS Genetics2014
25499090Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes.Retrovirology2014
23673643Draft genome sequence of the Tibetan antelope.Nat Commun2013
24088337Transposable element evolution in Heliconius suggests genome diversity within Lepidoptera.Mobile DNA2013
23674305Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies.Genome Res2013
22041054Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera.Gene2012
22293439Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.Genome Biol2012
22465530A non-LTR retroelement extinction in Spermophilus tridecemlineatus.Gene2012
22491057Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.Genome Biology and Evolution2012
21895648Phylogenetic structure illuminates the mechanistic role of environmental heterogeneity in community organization.Journal of Animal Ecology2012
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Center for BioModular Multi-Scale Systems, Louisiana State University
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