Author details

Full Name

Sagi Shapira

Affiliation

Institute for Genomic Medicine, Columbia University

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
35233546	System-wide transcriptome damage and tissue identity loss in COVID-19 patients.	Cell Rep Med	2022
33319166	Transcriptional response modules characterize IL-1Î² and IL-6 activity in COVID-19.	iScience	2021
33712587	Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.	Nat Commun	2021
33758858	Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps.	bioRxiv	2021
33053371	A Sweep of Earth's Virome Reveals Host-Guided Viral Protein Structural Mimicry and Points to Determinants of Human Disease.	Cell Syst	2021
32511494	Identification of Immune complement function as a determinant of adverse SARS-CoV-2 infection outcome.	medRxiv	2020
33299992	Transcriptional response modules characterise IL-1Î² and IL-6 activity in COVID-19.	bioRxiv	2020
32747830	Immune complement and coagulation dysfunction in adverse outcomes of SARS-CoV-2 infection.	Nat Med	2020
30798991	Negative Regulation of Cytosolic Sensing of DNA.	Int Rev Cell Mol Biol	2019
31474372	A Structure-Informed Atlas of Human-Virus Interactions.	Cell	2019
30410089	Author Correction: The discovery of Bombali virus adds further support for bats as hosts of ebolaviruses.	Nat Microbiol	2018
30150734	The discovery of Bombali virus adds further support for bats as hosts of ebolaviruses.	Nat Microbiol	2018
28423339	Germ-Cell-Specific Inflammasome Component NLRP14 Negatively Regulates Cytosolic Nucleic Acid Sensing to Promote Fertilization.	Immunity	2017
27770567	A computational interactome and functional annotation for the human proteome.	Elife	2016
27936040	A High-Throughput Strategy for Dissecting Mammalian Genetic Interactions.	PLoS One	2016
26651948	Meta- and Orthogonal Integration of Influenza "OMICs" Data Defines a Role for UBR4 in Virus Budding.	Cell Host Microbe	2015
21111589	Systems biology approaches to dissect mammalian innate immunity.	Curr Opin Immunol	2011
21854987	Stochastic state transitions give rise to phenotypic equilibrium in populations of cancer cells.	Cell	2011
20156658	NF-kappaB1 contributes to T cell-mediated control of Toxoplasma gondii in the CNS.	J Neuroimmunol	2010
20064372	A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection.	Cell	2009
16481345	Opposing roles of NF-kappaB family members in the regulation of NK cell proliferation and production of IFN-gamma.	Int Immunol	2006
16079291	Initiation and termination of NF-kappaB signaling by the intracellular protozoan parasite Toxoplasma gondii.	J Cell Sci	2005
15905559	Dendritic cell-intrinsic expression of NF-kappa B1 is required to promote optimal Th2 cell differentiation.	J Immunol	2005
15055212	The NF-kappaB signaling pathway: immune evasion and immunoregulation during toxoplasmosis.	Int J Parasitol	2004
15585871	Helminth antigens modulate TLR-initiated dendritic cell activation.	J Immunol	2004
11865442	Suppression of NF-kappaB activation by infection with Toxoplasma gondii.	J Infect Dis	2002
12370384	Differential requirement for NF-kappa B family members in control of helminth infection and intestinal inflammation.	J Immunol	2002

1 - 27 of 27

Roosheel S Patel

Icahn School of Medicine at Mount Sinai

Career Start Year 2015

Number of shared co-authors 6

Lorena Zuliani-Alvarez

J. David Gladstone Institutes

Career Start Year 2015

Number of shared co-authors 8

Bryan D Bryson

Massachusetts Institute of Technology, USA The Ragon Institute of MGH

Career Start Year 2012

Number of shared co-authors 2

Nicolas Tchitchek

Sorbonne University INSERM

Career Start Year 2010

Number of shared co-authors 0

Craig B Wilen

Yale School of Medicine

Career Start Year 2010

Number of shared co-authors 2

Jennifer Tisoncik-Go

Center for Innate Immunity and Immune Disease, University of Washington

Career Start Year 2009

Number of shared co-authors 2

David Langlais

McGill University

Career Start Year 2008

Number of shared co-authors 0

Hans-Heinrich Hoffmann

The Rockefeller University

Career Start Year 2008

Number of shared co-authors 10

Naeha Subramanian

Institute for Systems Biology

Career Start Year 2006

Number of shared co-authors 1

Amie J Eisfeld

Influenza Research Institute, University of Wisconsin-Madison

Career Start Year 2006

Number of shared co-authors 0

Jean Chang

Center for Innate Immunity and Immune Disease, University of Washington

Career Start Year 2005

Number of shared co-authors 0

Richard Green

Center for Innate Immunity and Immune Disease, University of Washington

Career Start Year 2005

Number of shared co-authors 2

Courtney Wilkins

Center for Innate Immunity and Immune Disease, University of Washington

Career Start Year 2005

Number of shared co-authors 1

Ivan Marazzi

Center for Epigenetics and Metabolism, University of California irvine

Career Start Year 2004

Number of shared co-authors 13

Jan Rehwinkel

MRC Weatherall Institute of Molecular Medicine, University of Oxford

Career Start Year 2004

Number of shared co-authors 2

Alan H Diercks

Seattle Children's Research Institute

Career Start Year 2002

Number of shared co-authors 0

David J Lynn

South Australian Health and Medical Research Institute

Career Start Year 2002

Number of shared co-authors 0

Antje Blumenthal

Frazer Institute, The University of Queensland

Career Start Year 2001

Number of shared co-authors 0

Kristin L Patrick

Texas A&M University School of Medicine

Career Start Year 2001

Number of shared co-authors 2

Sean C Proll

Fred Hutchinson Cancer Research Center

Career Start Year 2001

Number of shared co-authors 3

Thomas E Morrison

University of Colorado Anschutz Medical Campus

Career Start Year 2001

Number of shared co-authors 0

Victor R DeFilippis

Vaccine and Gene Therapy Institute, Oregon Health and Science University

Career Start Year 2000

Number of shared co-authors 0

Carrie M Rosenberger

Genentech Inc.

Career Start Year 2000

Number of shared co-authors 2

Renee C Ireton

Center for Innate Immunity and Immune Disease, University of Washington

Career Start Year 1997

Number of shared co-authors 1

Priya Ranjan

Pondicherry University

Career Start Year 1997

Number of shared co-authors 2

Victoria S Carter

University of Washington

Career Start Year 1993

Number of shared co-authors 1

Akiko Iwasaki

Yale University

Career Start Year 1990

Number of shared co-authors 3

Michael Gale

Center for Innate Immunity and Immune Disease, University of Washington

Career Start Year 1988

Number of shared co-authors 4

Peter Ghazal

UK System Immunity Research Institute, Cardiff University

Career Start Year 1985

Number of shared co-authors 0

Alan Aderem

Seattle Children's Research Institute

Career Start Year 1979

Number of shared co-authors 3

row(s) 1 - 30 of 30

Jonathan Foox

Co-authored papers 7

Cem Meydan

Co-authored papers 7

Christopher E Mason

Feil Family Brain and Mind Research Institute.

Co-authored papers 6

Nicholas P Tatonetti

Columbia Universtiy College of Physicians and Surgeons

Co-authored papers 5

Barry Honig

Columbia University Irving Medical Center

Co-authored papers 4

Nir Hacohen

Broad Institute of MIT and Harvard

Co-authored papers 3

Alain C Borczuk

Co-authored papers 3

Hanna Rennert

New York NewYork-Presbyterian Hospital

Co-authored papers 3

Ari Melnick

Co-authored papers 3

Shawn Levy

HudsonAlpha Institute for Biotechnology

Co-authored papers 3

Matthew MacKay

Co-authored papers 3

Iman Hajirasouliha

Institute for Computational Biomedicine

Co-authored papers 3

Marcin Imielinski

Co-authored papers 3

Mahdad Noursadeghi

University College London

Co-authored papers 2

Raul Rabadan

Columbia University Vagelos College of Physicians and Surgeons

Co-authored papers 2

Edward M Rubin

Co-authored papers 2

Massimo Loda

Weill Medical College of Cornell University

Co-authored papers 2

Michael C Zody

Broad Institute of Harvard and MIT

Co-authored papers 2

Deanne Taylor

Co-authored papers 2

Alison J Kriegel

Co-authored papers 2

Afshin Beheshti

Co-authored papers 2

Olivier Elemento

Meyer Cancer Center

Co-authored papers 2

Jessica K De Freitas

Icahn School of Medicine at Mount Sinai

Co-authored papers 2

Benjamin S Glicksberg

Hasso Plattner Institute for Digital Health, Icahn School of Medicine at Mount Sinai

Co-authored papers 2

Steven P Salvatore

NewYork-Presbyterian Hospital-Weill Cornell Medicine

Co-authored papers 2

Jonathan C Schisler

Co-authored papers 2

Paul D De Jesus

Sanford Burnham Prebys Medical Discovery Institute

Co-authored papers 1

Dianna L Ng

Memorial Sloan Kettering Cancer Center

Co-authored papers 1

Erik Verschueren

University of California San Francisco

Co-authored papers 1

Megan L Shaw

Icahn School of Medicine at Mount Sinai

Co-authored papers 1

1 - 30

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