Author details

Full Name

James P Carson

Affiliation

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36413377	LungMAP Portal Ecosystem: Systems-level Exploration of the Lung.	Am J Respir Cell Mol Biol	2024
37468756	Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).	Nat Cell Biol	2023
36465564	An optimized approach and inflation media for obtaining complimentary mass spectrometry-based omics data from human lung tissue.	Front Mol Biosci	2022
31412198	Lipid Coverage in Nanospray Desorption Electrospray Ionization Mass Spectrometry Imaging of Mouse Lung Tissues.	Anal Chem	2019
29516783	Time-resolved proteome profiling of normal lung development.	Am J Physiol Lung Cell Mol Physiol	2018
28755258	Towards High-Resolution Tissue Imaging Using Nanospray Desorption Electrospray Ionization Mass Spectrometry Coupled to Shear Force Microscopy.	J Am Soc Mass Spectrom	2018
30596133	Spatial distribution of marker gene activity in the mouse lung during alveolarization.	Data Brief	2018
29972024	Multifunctional Activity-Based Protein Profiling of the Developing Lung.	J Proteome Res	2018
30194354	Cell type-resolved human lung lipidome reveals cellular cooperation in lung function.	Sci Rep	2018
28145528	Lipidomics reveals dramatic lipid compositional changes in the maturing postnatal lung.	Sci Rep	2017
28798251	LungMAP: The Molecular Atlas of Lung Development Program.	Am J Physiol Lung Cell Mol Physiol	2017
29367553	Hemodynamics Modify Collagen Deposition in the Early Embryonic Chicken Heart Outflow Tract.	J Cardiovasc Dev Dis	2017
28004771	Spatially-Resolved Proteomics: Rapid Quantitative Analysis of Laser Capture Microdissected Alveolar Tissue Samples.	Sci Rep	2016
33311732	Computational fluid dynamics modeling of spore deposition in rabbit and human respiratory airways.	Journal of Aerosol Science	2016
28268548	A chicken embryo cardiac outflow tract atlas for registering changes due to abnormal blood flow.	Annu Int Conf IEEE Eng Med Biol Soc	2016
25858911	Comparative Risks of Aldehyde Constituents in Cigarette Smoke Using Transient Computational Fluid Dynamics/Physiologically Based Pharmacokinetic Models of the Rat and Human Respiratory Tracts.	Toxicological Sciences	2015
25284011	A digital atlas of ion channel expression patterns in the two-week-old rat brain.	Neuroinformatics	2015
24393332	Automated measurement of heterogeneity in CT images of healthy and diseased rat lungs using variogram analysis of an octree decomposition.	BMC Medical Imaging	2014
25570697	3D imaging of microbial biofilms: integration of synchrotron imaging and an interactive visualization interface.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	2014
23293066	An efficient algorithm for mapping imaging data to 3D unstructured grids in computational biomechanics.	International Journal for Numerical Methods in Biomedical Engineering	2013
24040919	High-speed tandem mass spectrometric in situ imaging by nanospray desorption electrospray ionization mass spectrometry.	Anal Chem	2013
24347680	A Bidirectional Coupling Procedure Applied to Multiscale Respiratory Modeling.	Journal of Computational Physics	2013
24029058	Detecting radiation-induced injury using rapid 3D variogram analysis of CT images of rat lungs.	Academic Radiology	2013
23799057	Dynamic multiscale boundary conditions for 4D CT of healthy and emphysematous rats.	PLoS ONE	2013
23786464	In situ casting and imaging of the rat airway tree for accurate 3D reconstruction.	Experimental Lung Research	2013
23090209	Automated, foot-bone registration using subdivision-embedded atlases for spatial mapping of bone mineral density.	Journal of Digital Imaging	2013
23256596	Imaging nicotine in rat brain tissue by use of nanospray desorption electrospray ionization mass spectrometry.	Analytical Chemistry	2013
23366100	Detecting distance between injected microspheres and target tumor via 3D reconstruction of tissue sections.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	2012
22584687	Comparative computational modeling of airflows and vapor dosimetry in the respiratory tracts of rat, monkey, and human.	Toxicol Sci	2012
22528468	Branch-based model for the diameters of the pulmonary airways: accounting for departures from self-consistency and registration errors.	Anat Rec (Hoboken)	2012
22954319	Automated platform for high-resolution tissue imaging using nanospray desorption electrospray ionization mass spectrometry.	Analytical Chemistry	2012
22771528	Phase-contrast MRI and CFD modeling of apparent Â³He gas flow in rat pulmonary airways.		2012
23285598	Similarity-based appearance-prior for fitting a subdivision mesh in gene expression images.		2012
23367185	Visualization of high resolution spatial mass spectrometric data during acquisition.	Annu Int Conf IEEE Eng Med Biol Soc	2012
22256218	Lossless 3-D reconstruction and registration of semi-quantitative gene expression data in the mouse brain.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	2011
26561477	Markov Random Field-based Fitting of a Subdivision-based Geometric Atlas.	Proceedings of the IEEE International Conference on Computer Vision	2011
22388864	Landmark/Image-based Deformable Registration of Gene Expression Data.	Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition	2011
21118219	A semiautomated approach for artefact removal in serial tissue cryosections.	Journal of Microscopy	2011
20454531	Fluid-Structure Interactions of the Mitral Valve and Left Heart: Comprehensive Strategies, Past, Present and Future.	International Journal for Numerical Methods in Engineering	2010
19698790	Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain.	Methods	2010
19727874	Adaptive generation of multimaterial grids from imaging data for biomedical Lagrangian fluid-structure simulations.	Biomechanics and Modeling in Mechanobiology	2010
19664714	Subdivision meshes for organizing spatial biomedical data.	Methods	2010
20382502	High resolution lung airway cast segmentation with proper topology suitable for computational fluid dynamic simulations.	Computerized Medical Imaging and Graphics	2010
20161102	Variational Generation of Prismatic Boundary-Layer Meshes for Biomedical Computing.	International Journal for Numerical Methods in Engineering	2009
31527991	An Anisotropic Fluid-Solid Model of the Mouse Heart.		2009
19688093	Comparison of two quantitative methods of discerning airspace enlargement in smoke-exposed mice.	PLoS ONE	2009
19526263	Automatic identification and truncation of boundary outlets in complex imaging-derived biomedical geometries.	Medical and Biological Engineering and Computing	2009
18951511	An automated self-similarity analysis of the pulmonary tree of the Sprague-Dawley rat.	Anatomical Record	2008
18216249	The insulin-like growth factor pathway is altered in spinocerebellar ataxia type 1 and type 7.	Proceedings of the National Academy of Sciences of the United States of America	2008
17518066	Learning-based segmentation framework for tissue images containing gene expression data.	IEEE Trans Med Imaging	2007