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Author Details

Robert J Schmitz
University of Georgia
1989
152
58
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37194692Knockout of protein phosphatase 1 in Leishmania major reveals its role during RNA polymerase II transcription termination.Nucleic Acids Res2023
37562412Leveraging Single-Cell Populations to Uncover the Genetic Basis of Complex Traits.Annu Rev Genet2023
37808859Enhancers associated with unstable RNAs are rare in plants.bioRxiv2023
37393253The role of Dmnt1 during spermatogenesis of the insect Oncopeltus fasciatus.Epigenetics Chromatin2023
36947693Smar2C2: A Simple and Efficient Protocol for the Identification of Transcription Start Sites.Curr Protoc2023
37309871Exploring plant cis-regulatory elements at single-cell resolution: overcoming biological and computational challenges to advance plant research.Plant J2023
37072475DNMT1 mutant ants develop normally but have disrupted oogenesis.Nat Commun2023
34390932Single-cell analysis of cis-regulatory elements.Curr Opin Plant Biol2022
35605196A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells.Plant Commun2022
36209559Editorial overview: COPB issue 2022 on "epigenetics and gene regulation".Curr Opin Plant Biol2022
36030508Simple and accurate transcriptional start site identification using Smar2C2 and examination of conserved promoter features.Plant J2022
36050461Dynamic genome evolution in a model fern.Nat Plants2022
34918159Cis-regulatory sequences in plants: Their importance, discovery, and future challenges.Plant Cell2022
35087209Molecular properties of epimutation hotspots.Nat Plants2022
35298644Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.Plant Physiol2022
34648025Quality control and evaluation of plant epigenomics data.Plant Cell2022
33468665IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains.Proc Natl Acad Sci U S A2021
33793861Anno genominis XX: 20 years of Arabidopsis genomics.Plant Cell2021
33683350Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons.Genetics2021
33565589Evolution of Conserved Noncoding Sequences in Arabidopsis thaliana.Mol Biol Evol2021
33843583The essential role of Dnmt1 in <i>gametogenesis</i> in the large milkweed bug <i>Oncopeltus fasciatus</i>.Elife2021
34849810Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes.G3 (Bethesda)2021
34430912Profiling single-cell chromatin accessibility in plants.STAR Protoc2021
34514290Multiplex genome editing in <i>Arabidopsis thaliana</i> using Mb3Cas12a.Plant Direct2021
34568920Leveraging histone modifications to improve genome annotations.G3 (Bethesda)2021
34845222Heterochromatin is a quantitative trait associated with spontaneous epiallele formation.Nat Commun2021
34353948De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.Science2021
34016450Epimutations Define a Fast-Ticking Molecular Clock in Plants.Trends Genet2021
33964211A cis-regulatory atlas in maize at single-cell resolution.Cell2021
34147068Chromatin accessibility profiling in Neurospora crassa reveals molecular features associated with accessible and inaccessible chromatin.BMC Genomics2021
33400914Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery.Dev Cell2021
32122962The <i>Gossypium longicalyx</i> Genome as a Resource for Cotton Breeding and Evolution.G3 (Bethesda)2020
32084124Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes.PLoS Genet2020
32071208Natural variation in DNA methylation homeostasis and the emergence of epialleles.Proc Natl Acad Sci U S A2020
33089114A Qualitative Change in the Transcriptome Occurs after the First Cell Cycle and Coincides with Lumen Establishment during MDCKII Cystogenesis.iScience2020
32879011Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes.Proc Natl Acad Sci U S A2020
33023650AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants.Genome Biol2020
30616649Dnmt1 is essential for egg production and embryo viability in the large milkweed bug, Oncopeltus fasciatus.Epigenetics Chromatin2019
31740772The prevalence, evolution and chromatin signatures of plant regulatory elements.Nat Plants2019
30216456Spontaneous epimutations in plants.New Phytol2019
31245771Directions for research and training in plant omics: Big Questions and Big Data.Plant Direct2019
31558570EvoChromo: towards a synthesis of chromatin biology and evolution.Development2019
31356150Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation.Elife2019
31527844Multiple genes recruited from hormone pathways partition maize diterpenoid defences.Nat Plants2019
31498837Monitoring the interplay between transposable element families and DNA methylation in maize.PLoS Genet2019
31399242DNA Methylation: Shared and Divergent Features across Eukaryotes.Trends Genet2019
31342224Rational development of transformation in Clostridium thermocellum ATCC 27405 via complete methylome analysis and evasion of native restriction-modification systems.J Ind Microbiol Biotechnol2019
31591252Loss of the FOXP1 Transcription Factor Leads to Deregulation of B Lymphocyte Development and Function at Multiple Stages.Immunohorizons2019
31418686Epigenetic silencing of a multifunctional plant stress regulator.Elife2019
30778188Diversity of cytosine methylation across the fungal tree of life.Nat Ecol Evol2019
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Collaborators

Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 25
Joseph R Nery
The Salk Institute for Biological Studies
Co-authored papers 10
Mark A Urich
The Salk Institute for Biological Studies
Co-authored papers 10
Matthew D Schultz
Co-authored papers 7
Steven P Briggs
Co-authored papers 5
Zhouxin Shen
Co-authored papers 5
Peng Zhou
Co-authored papers 4
Huaming Chen
The Salk Institute for Biological Studies
Co-authored papers 4
Shao-Shan Carol Huang
Salk Institute for Biological Studies
Co-authored papers 4
Chuan He
Institute of Hematology, West China Hospital of Sichuan University
Co-authored papers 4
Miao Yu
Co-authored papers 3
Mattia Pelizzola
Center for Genomic Science of , Istituto Italiano di Tecnologia (IIT)
Co-authored papers 3
Ryan Lister
Co-authored papers 3
Hong Qiao
Institute for Cellular and Molecular Biology, The University of Texas at Austin
Co-authored papers 3
Yupeng He
Salk Institute for Biological Studies
Co-authored papers 3
Nicholas J Schork
University of California San Diego
Co-authored papers 3
Dong Xu
University of Missouri
Co-authored papers 2
Derek C Angus
University of Pittsburgh Medical Center
Co-authored papers 2
James H Leebens-Mack
Co-authored papers 2
Doreen Ware
USDA ARS NAA Robert W. Holley Center for Agriculture and Health
Co-authored papers 2
Steve A Kay
Keck School of Medicine, University of Southern California
Co-authored papers 2
Shengqiang Shu
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Ethalinda K S Cannon
USDA-ARS, Corn Insects and Crop Genetics Research Unit
Co-authored papers 2
Hediye Erdjument-Bromage
Neuroscience Institute, NYU Grossman School of Medicine
Co-authored papers 2
Matthew W Vaughn
Co-authored papers 2
Jason E Stajich
University of California-Riverside
Co-authored papers 2
Thomas A Neubert
Neuroscience Institute, NYU Grossman School of Medicine
Co-authored papers 2
Colleen J Doherty
North Carolina State University
Co-authored papers 2
Anna Lipzen
Co-authored papers 2
Ondrej Libiger
The Qualcomm Institute, University of California
Co-authored papers 2
Release 1.2