Author details

Full Name

Mathangi Thiagarajan

Affiliation

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36266629	Neoplastic cell enrichment of tumor tissues using coring and laser microdissection for proteomic and genomic analyses of pancreatic ductal adenocarcinoma.	Clin Proteomics	2022
34858420	Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens.	Front Immunol	2021
34007079	Author Correction: The NCI Genomic Data Commons.	Nat Genet	2021
33577785	Proteogenomic and metabolomic characterization of human glioblastoma.	Cancer Cell	2021
33619384	The NCI Genomic Data Commons.	Nat Genet	2021
33417831	Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.	Cancer Cell	2021
32954372	Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.	Cell Rep Med	2020
31923397	Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.	Cell	2020
32529193	Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.	Cell Rep Med	2020
31675502	Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.	Cell	2019
26856261	Genomic insights into the Ixodes scapularis tick vector of Lyme disease.	Nat Commun	2016
24586863	Functional tradeoffs underpin salinity-driven divergence in microbial community composition.	PLoS One	2014
24349140	A metagenomic framework for the study of airborne microbial communities.	PLoS One	2013
23159114	Metagenomic investigation of microbes and viruses in patients with jaw osteonecrosis associated with bisphosphonate therapy.	Oral Surg Oral Med Oral Pathol Oral Radiol	2012
22278668	Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic.	ISME J	2012
22719821	A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP).	PLoS One	2012
22719234	Metabolic reconstruction for metagenomic data and its application to the human microbiome.	PLoS Comput Biol	2012
23137308	Comparative genomic analysis and phylogenetic position of Theileria equi.	BMC Genomics	2012
23082107	Metagenomic exploration of viruses throughout the Indian Ocean.	PLoS One	2012
20668244	Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton.	Proc Natl Acad Sci U S A	2010
21304707	The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data.	Stand Genomic Sci	2010
20798169	METAREP: JCVI metagenomics reports--an open source tool for high-performance comparative metagenomics.	Bioinformatics	2010
19843611	Pathema: a clade-specific bioinformatics resource center for pathogen research.	Nucleic Acids Res	2010
19077187	Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species.	BMC Genomics	2008
19036158	Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure.	BMC Genomics	2008
16933976	Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.	PLoS Biol	2006
16415889	Physiogenomic resources for rat models of heart, lung and blood disorders.	Nat Genet	2006
16939790	TM4 microarray software suite.	Methods Enzymol	2006
12613259	TM4: a free, open-source system for microarray data management and analysis.	Biotechniques	2003