Author details

Full Name

Matthieu Chavent

Affiliation

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37205542	MDverse: Shedding Light on the Dark Matter of Molecular Dynamics Simulations.		2023
38091517	Molecular Modeling and Simulation of the Mycobacterial Cell Envelope: From Individual Components to Cell Envelope Assemblies.		2023
37213533	A brief history of visualizing membrane systems in molecular dynamics simulations.		2023
35776840	Design - a new way to look at old molecules.	Journal of integrative bioinformatics	2022
36240740	GPC3-Unc5 receptor complex structure and role in cell migration.	Cell	2022
35700726	The guidance and adhesion protein FLRT2 dimerizes in cis via dual small-X-small transmembrane motifs.	Structure	2022
35377789	Proteasome complexes experience profound structural and functional rearrangements throughout mammalian spermatogenesis.	Proc Natl Acad Sci U S A	2022
31928845	Structural Basis of Teneurin-Latrophilin Interaction in Repulsive Guidance of Migrating Neurons.	Cell	2020
32196545	Visualizing protein structures - tools and trends.	Biochemical Society Transactions	2020
31525920	Sharing Data from Molecular Simulations.	Journal of Chemical Information and Modeling	2019
31564470	Molecular Graphics: Bridging Structural Biologists and Computer Scientists.	Structure	2019
31757855	The conical shape of DIM lipids promotes infection of macrophages.	Proceedings of the National Academy of Sciences of the United States of America	2019
30595453	Cholesterol Interaction Sites on the Transmembrane Domain of the Hedgehog Signal Transducer and Class F G Protein-Coupled Receptor Smoothened.	Structure	2019
29887500	Interactions of the EphA2 Kinase Domain with PIPs in Membranes: Implications for Receptor Function.	Structure	2018
30030429	How nanoscale protein interactions determine the mesoscale dynamic organisation of bacterial outer membrane proteins.	Nature Communications	2018
29192147	Protein crowding and lipid complexity influence the nanoscale dynamic organization of ion channels in cell membranes.	Scientific Reports	2017
27722554	Membrane stiffness is modified by integral membrane proteins.	Soft Matter	2016
27341016	Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale.	Current Opinion in Structural Biology	2016
27091502	Super-complexes of adhesion GPCRs and neural guidance receptors.	Nat Commun	2016
26724997	Structures of the EphA2 Receptor at the Membrane: Role of Lipid Interactions.	Structure	2016
27786441	Lipid-Loving ANTs: Molecular Simulations of Cardiolipin Interactions and the Organization of the Adenine Nucleotide Translocase in Model Mitochondrial Membranes.	Biochemistry	2016
26061769	Supramolecular assemblies underpin turnover of outer membrane proteins in bacteria.	Nature	2015
25505095	Epock: rapid analysis of protein pocket dynamics.		2015
25703376	Nothing to sneeze at: a dynamic and integrative computational model of an influenza A virion.	Structure	2015
26244728	Molecular Simulations of Gram-Negative Bacterial Membranes: A Vignette of Some Recent Successes.	Biophysical Journal	2015
24155158	Blind prediction of interfacial water positions in CAPRI.	Proteins	2014
25286141	Dimerization of the EphA1 receptor tyrosine kinase transmembrane domain: Insights into the mechanism of receptor activation.	Biochemistry	2014
25341001	Methodologies for the analysis of instantaneous lipid diffusion in MD simulations of large membrane systems.		2014
23483961	Game on, science - how video game technology may help biologists tackle visualization challenges.	PLoS ONE	2013
22730430	Bendix: intuitive helix geometry analysis and abstraction.		2012
21735559	GPU-accelerated atom and dynamic bond visualization using hyperballs: a unified algorithm for balls, sticks, and hyperboloids.	Journal of Computational Chemistry	2011
21310717	GPU-powered tools boost molecular visualization.	Briefings in Bioinformatics	2011
19013433	Biochemical studies and molecular dynamics simulations of Smad3-Erbin interaction identify a non-classical Erbin PDZ binding.	Biochem Biophys Res Commun	2009
18172702	Multiple-step virtual screening using VSM-G: overview and validation of fast geometrical matching enrichment.	J Mol Model	2008
18571960	MetaMol: high-quality visualization of molecular skin surface.	J Mol Graph Model	2008