Author details

Full Name

Bonnie L Hurwitz

Affiliation

The University of Arizona

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36760501	Evaluation of computational phage detection tools for metagenomic datasets.	Front Microbiol	2023
38058765	Comparison of k-mer-based <i>de novo</i> comparative metagenomic tools and approaches.	Microbiome Res Rep	2023
34820870	Role of the gut microbiome in cardiovascular drug response: The potential for clinical application.	Pharmacotherapy	2022
35477946	Network analysis reveals dysregulated functional patterns in type II diabetic skin.	Sci Rep	2022
32735679	Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data.	Nucleic Acids Res	2021
37938275	Cyanolichen microbiome contains novel viruses that encode genes to promote microbial metabolism.	ISME Commun	2021
33622857	Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.	mSystems	2021
34956127	Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems.	Front Microbiol	2021
34391819	An adaptable and non-invasive method for tracking Bifidobacterium animalis subspecies lactis 420 in the mouse gut.	J Microbiol Methods	2021
33947809	Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".	mSystems	2021
32561801	COVID-19 pandemic reveals the peril of ignoring metadata standards.	Sci Data	2020
33228639	The dynamic wound microbiome.	BMC Med	2020
30556814	Minimum Information about an Uncultivated Virus Genome (MIUViG).	Nat Biotechnol	2019
31756192	Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity.	PLoS Comput Biol	2019
31289831	iMicrobe: Tools and data-dreaiven discovery platform for the microbiome sciences.	Gigascience	2019
31372655	Erratum to: iMicrobe: Tools and data-driven discovery platform for the microbiome sciences.	Gigascience	2019
31057513	The Promises and Pitfalls of Machine Learning for Detecting Viruses in Aquatic Metagenomes.	Front Microbiol	2019
30597002	Libra: scalable k-mer-based tool for massive all-vs-all metagenome comparisons.	Gigascience	2019
29100906	Phage hunters: Computational strategies for finding phages in large-scale 'omics datasets.	Virus Res	2018
27420028	iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure.	ISME J	2017
28117450	Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics.	ISME J	2017
28940494	16S rRNA gene sequencing on a benchtop sequencer: accuracy for identification of clinically important bacteria.	J Appl Microbiol	2017
28951889	Functional Changes in the Gut Microbiome Contribute to Transforming Growth Factor Î²-Deficient Colon Cancer.	mSystems	2017
28763055	Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.	Sci Data	2017
27030726	Computational prospecting the great viral unknown.	FEMS Microbiol Lett	2016
26296067	Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics.	ISME J	2016
27726817	Skin and Soft Tissue Infections.	Microbiol Spectr	2016
27547938	Protocols.io: Virtual Communities for Protocol Development and Discussion.	PLoS Biol	2016
27088500	Viral metabolic reprogramming in marine ecosystems.	Curr Opin Microbiol	2016
25093636	Depth-stratified functional and taxonomic niche specialization in the 'core' and 'flexible' Pacific Ocean Virome.	ISME J	2015
26207033	Set Phages to Stun: Reducing the Virulence of Staphylococcus aureus in Diabetic Foot Ulcers.	Diabetes	2015
26205854	Draft Genome Sequence of the Ale-Fermenting Saccharomyces cerevisiae Strain GSY2239.	Genome Announc	2015
26038737	VirSorter: mining viral signal from microbial genomic data.	PeerJ	2015
25564342	Microbiology of diabetic foot infections: from Louis Pasteur to 'crime scene investigation'.	BMC Med	2015
24721602	Three-dimensional printing surgical instruments: are we there yet?	J Surg Res	2014
25002514	Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses.	Proc Natl Acad Sci U S A	2014
22845467	Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics.	Environ Microbiol	2013
24200126	Metabolic reprogramming by viruses in the sunlit and dark ocean.	Genome Biol	2013
23468974	The Pacific Ocean virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology.	PLoS One	2013
20084295	Rapid genomic characterization of the genus vitis.	PLoS One	2010
21966902	Dynamics of genome evolution in facultative symbionts of aphids.	Environ Microbiol	2010
20626650	Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza.	Plant J	2010
19965431	A first-generation haplotype map of maize.	Science	2009
20525603	Species trees from highly incongruent gene trees in rice.	Syst Biol	2009
17984077	Gramene: a growing plant comparative genomics resource.	Nucleic Acids Res	2008
18304353	Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.	Genome Biol	2008
16895597	Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum.	BMC Genomics	2006

1 - 47 of 47

Jose Manuel Mart??

Lawrence Livermore National Laboratory

Career Start Year 2015

Number of shared co-authors 1

Alexander Crits-Christoph

University of California berkeley

Career Start Year 2013

Number of shared co-authors 0

Migun Shakya

Los Alamos National Laboratory

Career Start Year 2012

Number of shared co-authors 13

Neha Varghese

Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Career Start Year 2011

Number of shared co-authors 12

Chien-Chi Lo

Los Alamos National Laboratory

Career Start Year 2009

Number of shared co-authors 13

Nicola Segata

University of Trento

Career Start Year 2008

Number of shared co-authors 7

Daniel McDonald

University of California San Diego

Career Start Year 2007

Number of shared co-authors 9

Davide Albanese

Fondazione Edmund Mach

Career Start Year 2006

Number of shared co-authors 2

Antonio Fernandez-Guerra

Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen

Career Start Year 2006

Number of shared co-authors 5

Gail L Rosen

Drexel University

Career Start Year 2006

Number of shared co-authors 0

Paul Wilmes

University of Luxembourg

Career Start Year 2004

Number of shared co-authors 5

Christopher S Miller

University of Colorado Denver.

Career Start Year 2004

Number of shared co-authors 4

Morgan G I Langille

Dalhousie University

Career Start Year 2004

Number of shared co-authors 6

Katherine Huang

Broad Institute of MIT and Harvard

Career Start Year 2004

Number of shared co-authors 2

Jack A Gilbert

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 2003

Number of shared co-authors 19

Alice C McHardy

Computational Biology of Infection Research, Helmholtz Centre for Infection Research

Career Start Year 2003

Number of shared co-authors 8

Libusha Kelly

Albert Einstein College of Medicine

Career Start Year 2001

Number of shared co-authors 1

Jo??o C Setubal

Chemistry Institute, Universidade de Sao Paulo - USP

Career Start Year 2000

Number of shared co-authors 8

Alexander Sczyrba

Center for Biotechnology (CeBiTec), Bielefeld University, Universitatsstrasse 27

Career Start Year 2000

Number of shared co-authors 4

Shibu Yooseph

University of Central Florida

Career Start Year 1998

Number of shared co-authors 11

Douglas B Rusch

Center for Genomics and Bioinformatics, Indiana University

Career Start Year 1998

Number of shared co-authors 7

Nicholas J Loman

University of Birmingham

Career Start Year 1998

Number of shared co-authors 1

Thomas Junier

Institute of Biology, University of Neuchatel

Career Start Year 1998

Number of shared co-authors 5

Eric J Alm

Massachusetts Institute of Technology 21 Ames St. Cambridge

Career Start Year 1998

Number of shared co-authors 6

Rob Knight

University of California

Career Start Year 1998

Number of shared co-authors 21

Jonathan H Badger

Center for Cancer Research, National Cancer Institute, National Institutes of Health

Career Start Year 1997

Number of shared co-authors 2

Thomas Brettin

University of Chicago

Career Start Year 1996

Number of shared co-authors 8

Karen E Nelson

J. Craig Venter Institute, 9605 Medical Center Drive

Career Start Year 1995

Number of shared co-authors 14

William C Nelson

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 11

Jonathan A Eisen

McLean Hospital

Career Start Year 1988

Number of shared co-authors 17

row(s) 1 - 30 of 30

Doreen Ware

USDA ARS NAA Robert W. Holley Center for Agriculture and Health

Co-authored papers 7

Elisha M Wood-Charlson

Lawrence Berkeley National Laboratory

Co-authored papers 6

Simon Roux

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 5

Lynn M Schriml

University of Maryland School of Medicine, Institute for Genome Sciences

Co-authored papers 4

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Co-authored papers 4

Rod A Wing

Arizona Genomics Institute, University of Arizona

Co-authored papers 4

Emiley A Eloe-Fadrosh

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 4

Pankaj Jaiswal

Oregon State University

Co-authored papers 3

Stanton L Martin

Oak Ridge National Laboratory

Co-authored papers 2

Ilene Karsch-Mizrachi

Co-authored papers 2

Judson Hervey

Center for Bio/Molecular Science and Engineering, Naval Research Laboratory

Co-authored papers 2

Daniel C Berrios

NASA Ames Research Center

Co-authored papers 2

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 2

Sylvain V Costes

NASA Ames Research Center

Co-authored papers 2

Anjanette Johnston

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 2

Jie Zheng

University of Pennsylvania Perelman School of Medicine

Co-authored papers 2

Patrick S G Chain

Los Alamos National Laboratory