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Author Details

Shuhei Noguchi
RIKEN Center for Integrative Medical Sciences
2009
23
14
PMIDPaper TitleJournal TitlePublished Year
35142952Prediction of transcription factors associated with DNA demethylation during human cellular development.Chromosome Res2022
35146392SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data.iScience2022
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
34011993Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2021
32094342RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2020
30407557Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.Nucleic Acids Res2019
31275609Combinatorial perturbation analysis reveals divergent regulations of mesenchymal genes during epithelial-to-mesenchymal transition.NPJ Syst Biol Appl2019
31075273refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites.J Mol Biol2019
31019211OVOL2 induces mesenchymal-to-epithelial transition in fibroblasts and enhances cell-state reprogramming towards epithelial lineages.Sci Rep2019
29045713SCPortalen: human and mouse single-cell centric database.Nucleic Acids Res2018
27794045Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.Nucleic Acids Res2017
28451981The FANTOM5 Computation Ecosystem: Genomic Information Hub for Promoters and Active Enhancers.Methods Mol Biol2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28850105FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies.Sci Data2017
28860506Differences in characteristics of glucose intolerance between patients with NAFLD and chronic hepatitis C as determined by CGMS.Sci Rep2017
27794176High fasting insulin concentrations may be a pivotal predictor for the severity of hepatic fibrosis beyond the glycemic status in non-alcoholic fatty liver disease patients before development of diabetes mellitus.Hepatol Res2017
27308969Fibrotic gene expression coexists with alveolar proteinosis in early indium lung.Inhal Toxicol2016
26286207Regulation of Gene Expression by Sodium Valproate in Epithelial-to-Mesenchymal Transition.Lung2015
24223115Glycemic variability is an independent predictive factor for development of hepatic fibrosis in nonalcoholic fatty liver disease.PLoS One2013
21470346Global analysis for functional residues of histone variant Htz1 using the comprehensive point mutant library.Genes Cells2011
20553507Global analysis of functional relationships between histone point mutations and the effects of histone deacetylase inhibitors.Genes Cells2010
19903202Global analysis of mutual interaction surfaces of nucleosomes with comprehensive point mutants.Genes Cells2009
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Collaborators

Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 10
Imad Abugessaisa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Atsushi Kondo
Tokyo University of Agriculture and Technology
Co-authored papers 6
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Marina Lizio
Cerevance Ltd
Co-authored papers 5
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
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Jessica Severin
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Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
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Alessandro Bonetti
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Kosuke Hashimoto
Kwansei Gakuin University
Co-authored papers 4
Jayson Harshbarger
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Michihira Tagami
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Jordan A Ramilowski
Advanced Medical Research Center, Yokohama City University
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Charles Plessy
Okinawa Institute of Science and Technology
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Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 3
Valerio Orlando
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 3
Yulia A Medvedeva
Research Center of Biotechnology RAS, Russian Academy of Sciences
Co-authored papers 3
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 3
Hiromasa Ono
Database Center for Life Science
Co-authored papers 2
Boris Lenhard
MRC London Institute of Medical Sciences
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Juha Kere
Folkhalsan Research Center, University of Helsinki
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Sachi Kato
RIKEN Center for Life Science Technologies
Co-authored papers 2
Hidemasa Bono
Hiroshima University
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Andreas Lennartsson
Karolinska Institute
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Miki Kojima
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