Author details

Full Name

Hongzhan Huang

Affiliation

ORCID

Career Start Year

1990

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36993571	Proteomic profiling of retina and retinal pigment epithelium combined embryonic tissue to facilitate ocular disease gene discovery.	Res Sq	2023
37398341	miR-31-mediated local translation at the mitotic spindle is important for early development.		2023
37191732	Proteomic profiling of retina and retinal pigment epithelium combined embryonic tissue to facilitate ocular disease gene discovery.	Hum Genet	2023
34517763	TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis.	mBio	2021
33821964	UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.	Bioinformatics	2021
33046717	Protein ontology on the semantic web for knowledge discovery.	Sci Data	2020
31797049	MS/MS in silico subtraction-based proteomic profiling as an approach to facilitate disease gene discovery: application to lens development and cataract.	Hum Genet	2020
30805646	PIRSitePredict for protein functional site prediction using position-specific rules.	Database (Oxford)	2019
30398656	InterPro in 2019: improving coverage, classification and access to protein sequence annotations.	Nucleic Acids Res	2019
29145615	iPTMnet: an integrated resource for protein post-translational modification network discovery.	Nucleic Acids Res	2018
29036527	iSyTE 2.0: a database for expression-based gene discovery in the eye.	Nucleic Acids Res	2018
30241500	Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus).	BMC Genomics	2018
30417254	RNA sequencing-based transcriptomic profiles of embryonic lens development for cataract gene discovery.	Human Genetics	2018
28150231	Protein Bioinformatics Databases and Resources.	Methods Mol Biol	2017
27899649	Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.	Nucleic Acids Res	2017
27899635	InterPro in 2017-beyond protein family and domain annotations.	Nucleic Acids Res	2017
28150246	iPTMnet: Integrative Bioinformatics for Studying PTM Networks.	Methods Mol Biol	2017
28150240	Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature.	Methods Mol Biol	2017
27153712	Computational clustering for viral reference proteomes.	Bioinformatics	2016
28706471	Scalable Text Mining Assisted Curation of Post-Translationally Modified Proteoforms in the Protein Ontology.	CEUR Workshop Proc	2016
26445145	RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism.	PLoS One	2015
25398609	UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.	Bioinformatics	2015
25649353	An integrated approach for analyzing clinical genomic variant data from next-generation sequencing.	J Biomol Tech	2015
25428371	The InterPro protein families database: the classification resource after 15 years.	Nucleic Acids Res	2015
24955109	Software for pre-processing Illumina next-generation sequencing short read sequences.	Source Code Biol Med	2014
24270789	Protein Ontology: a controlled structured network of protein entities.	Nucleic Acids Res	2014
23943793	Elevated FGF21 secretion, PGC-1Î± and ketogenic enzyme expression are hallmarks of iron-sulfur cluster depletion in human skeletal muscle.	Hum Mol Genet	2014
25122463	RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.	Database (Oxford)	2014
24565394	A framework for biomedical figure segmentation towards image-based document retrieval.	BMC Syst Biol	2013
23958731	A fast Peptide Match service for UniProt Knowledgebase.	Bioinformatics	2013
24196194	Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.	BMC Syst Biol	2013
23749465	Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint.	Database (Oxford)	2013
23637705	Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint.	Front Genet	2013
23617634	Structural and functional studies of S-adenosyl-L-methionine binding proteins: a ligand-centric approach.	BMC Struct Biol	2013
22434832	Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees.	Database (Oxford)	2012
21738574	Proteomic analysis of pathways involved in estrogen-induced growth and apoptosis of breast cancer cells.	PLoS One	2011
21082443	Protein-centric data integration for functional analysis of comparative proteomics data.	Methods Mol Biol	2011
21082430	Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase.	Methods Mol Biol	2011
21082424	Protein bioinformatics databases and resources.	Methods Mol Biol	2011
21478197	A comprehensive protein-centric ID mapping service for molecular data integration.	Bioinformatics	2011
20935045	The Protein Ontology: a structured representation of protein forms and complexes.	Nucleic Acids Res	2011
21370102	Omics-based molecular target and biomarker identification.	Methods Mol Biol	2011
21556138	Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.	PLoS One	2011
20657646	Phylogenomic analysis of marine Roseobacters.	PLoS One	2010
20463053	Molecular mechanisms mediating the effect of mono-(2-ethylhexyl) phthalate on hormone-stimulated steroidogenesis in MA-10 mouse tumor Leydig cells.	Endocrinology	2010
20369061	Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data.	Adv Bioinformatics	2010
19779614	Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets.	PLoS One	2009
17984082	An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data.	Nucleic Acids Res	2008
19088860	Integrated Bioinformatics for Radiation-Induced Pathway Analysis from Proteomics and Microarray Data.	J Proteomics Bioinform	2008
18645629	Challenges and solutions in proteomics.	Curr Genomics	2007