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Author Details

Aaron M Newman
Stanford University
1994
68
41
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36929073Profiling Cellular Ecosystems at Single-Cell Resolution and at Scale with EcoTyper.Methods Mol Biol2023
37491734CD4 T cells and toxicity from immune checkpoint blockade.Immunol Rev2023
37695745Diversity of intratumoral regulatory T cells in B-cell non-Hodgkin lymphoma.Blood Adv2023
37468633p53 governs an AT1 differentiation programme in lung cancer suppression.Nature2023
36879008High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE.Nat Biotechnol2023
36541010Single Cell Spatial Biology for Precision Cancer Medicine.Pac Symp Biocomput2023
36711732A spatial map of human macrophage niches reveals context-dependent macrophage functions in colon and breast cancer.Res Sq2023
35197475Integrative molecular and clinical profiling of acral melanoma links focal amplification of 22q11.21 to metastasis.Nat Commun2022
35538087Author Correction: Integrative molecular and clinical profiling of acral melanoma links focal amplification of 22q11.21 to metastasis.Nat Commun2022
35361996Inferring gene expression from cell-free DNA fragmentation profiles.Nat Biotechnol2022
36451859Multiomic analysis for optimization of combined focal and immunotherapy protocols in murine pancreatic cancer.Theranostics2022
36351009Identification of a minority population of LMO2<sup>+</sup> breast cancer cells that integrate into the vasculature and initiate metastasis.Sci Adv2022
35027754T cell characteristics associated with toxicity to immune checkpoint blockade in patients with melanoma.Nat Med2022
34244432Landscape of innate lymphoid cells in human head and neck cancer reveals divergent NK cell states in the tumor microenvironment.Proc Natl Acad Sci U S A2021
34597589The landscape of tumor cell states and ecosystems in diffuse large B cell lymphoma.Cancer Cell2021
34597583Atlas of clinically distinct cell states and ecosystems across human solid tumors.Cell2021
34620713Integrated spatial multiomics reveals fibroblast fate during tissue repair.Proc Natl Acad Sci U S A2021
32816892Molecular and Immunologic Signatures are Related to Clinical Benefit from Treatment with Vocimagene Amiretrorepvec (Toca 511) and 5-Fluorocytosine (Toca FC) in Patients with Glioma.Clin Cancer Res2020
31960376Profiling Cell Type Abundance and Expression in Bulk Tissues with CIBERSORTx.Methods Mol Biol2020
31711920Circulating Tumor DNA Analysis for Detection of Minimal Residual Disease After Chemoradiotherapy for Localized Esophageal Cancer.Gastroenterology2020
31974247Single-cell transcriptional diversity is a hallmark of developmental potential.Science2020
33007267Noninvasive Early Identification of Therapeutic Benefit from Immune Checkpoint Inhibition.Cell2020
32693087LEFTY1 Is a Dual-SMAD Inhibitor that Promotes Mammary Progenitor Growth and Tumorigenesis.Cell Stem Cell2020
30753108Reply to J. Wang et al.J Clin Oncol2019
31836708Functional significance of U2AF1 S34F mutations in lung adenocarcinomas.Nat Commun2019
31433971The Immune Landscape of Cancer.Immunity2019
31347163Computational approaches for characterizing the tumor immune microenvironment.Immunology2019
30770827A functional subset of CD8[+] T cells during chronic exhaustion is defined by SIRPα expression.Nat Commun2019
31061481Determining cell type abundance and expression from bulk tissues with digital cytometry.Nat Biotechnol2019
29344893Profiling Tumor Infiltrating Immune Cells with CIBERSORT.Methods Mol Biol2018
30125215Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma.J Clin Oncol2018
30294060Genomic Feature Selection by Coverage Design Optimization.J Appl Stat2018
30518860Complex mammalian-like haematopoietic system found in a colonial chordate.Nature2018
29463554Combination Approach for Detecting Different Types of Alterations in Circulating Tumor DNA in Leiomyosarcoma.Clin Cancer Res2018
29309048Early B cell changes predict autoimmunity following combination immune checkpoint blockade.J Clin Invest2018
27663899Role of KEAP1/NRF2 and TP53 Mutations in Lung Squamous Cell Carcinoma Development and Radiation Resistance.Cancer Discov2017
28329770Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens.Nature2017
28973448Targeted chromatin ligation, a robust epigenetic profiling technique for small cell numbers.Nucleic Acids Res2017
28679399Data normalization considerations for digital tumor dissection.Genome Biol2017
28570276Macrophage infiltration and genetic landscape of undifferentiated uterine sarcomas.JCI Insight2017
28899864Early Detection of Molecular Residual Disease in Localized Lung Cancer by Circulating Tumor DNA Profiling.Cancer Discov2017
27035983Identification of tumorigenic cells and therapeutic targets in pancreatic neuroendocrine tumors.Proc Natl Acad Sci U S A2016
27841271Corrigendum: Circulating tumour DNA profiling reveals heterogeneity of EGFR inhibitor resistance mechanisms in lung cancer patients.Nat Commun2016
27831904Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA.Sci Transl Med2016
27283993Circulating tumour DNA profiling reveals heterogeneity of EGFR inhibitor resistance mechanisms in lung cancer patients.Nat Commun2016
27372732High-throughput genomic profiling of tumor-infiltrating leukocytes.Curr Opin Immunol2016
27018799Integrated digital error suppression for improved detection of circulating tumor DNA.Nat Biotechnol2016
25822800Robust enumeration of cell subsets from tissue expression profiles.Nat Methods2015
26197454Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging.PLoS One2015
26193342The prognostic landscape of genes and infiltrating immune cells across human cancers.Nat Med2015
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Collaborators

Andrew J Gentles
Stanford Center for Biomedical Informatics Research, Stanford University
Co-authored papers 12
Aadel A Chaudhuri
Co-authored papers 7
Stephen R Quake
Stanford University
Co-authored papers 4
Farshad Farshidfar
Cumming School of Medicine, University of Calgary
Co-authored papers 3
Angela B Y Hui
Stanford University
Co-authored papers 3
Norma Neff
Stanford University
Co-authored papers 3
Garry P Nolan
Stanford University School of Medicine
Co-authored papers 2
Lecia V Sequist
Massachusetts General Hospital Cancer Center, Harvard Medical School
Co-authored papers 2
Cuong Hoang-Vu
Center for Cancer Research, National Cancer Institute
Co-authored papers 2
Kahn Rhrissorrakrai
T.J. Watson Research Center
Co-authored papers 2
Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 2
Ulrich D??hrsen
University Hospital Essen, University of Duisburg-Essen
Co-authored papers 2
Jonathan W Goldman
David Geffen School of Medicine at university of california los angeles
Co-authored papers 2
Mark M Davis
Co-authored papers 2
Brendan C Visser
Co-authored papers 2
Lisle E Mose
Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill
Co-authored papers 1
Laura M Heiser
Oregon Health Sciences University
Co-authored papers 1
Arvind Rao
University of Michigan-Ann Arbor
Co-authored papers 1
Teri A Longacre
Co-authored papers 1
Susan Bullman
Fred Hutchinson Cancer Center
Co-authored papers 1
Matthew H Porteus
Stanford University
Co-authored papers 1
Jose A Seoane
Universidade da Coruna
Co-authored papers 1
Capucine Van Rechem
Stanford University School of Medicine
Co-authored papers 1
Jianfang Liu
Peking University Third Hospital
Co-authored papers 1
Wanding Zhou
University of Pennsylvania
Co-authored papers 1
David L Gibbs
Institute for Systems Biology
Co-authored papers 1
Michael G Ozawa
Stanford University School of Medicine
Co-authored papers 1
Scott D Brown
BC Cancer Research Institute
Co-authored papers 1
Hai Hu
Chan Soon-Shiong Institute of Molecular Medicine at Windber
Co-authored papers 1
Vesteinn Thorsson
Institute for Systems Biology
Co-authored papers 1
Release 1.2