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Author Details

Andrew Carroll
Google LLC
2007
39
26
PMIDPaper TitleJournal TitlePublished Year
36050551DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer.Nat Biotechnol2023
37745389Local read haplotagging enables accurate long-read small variant calling.bioRxiv2023
37416509A deep-learning-based RNA-seq germline variant caller.Bioinform Adv2023
37173615Improving variant calling using population data and deep learning.BMC Bioinformatics2023
35020984Ultrarapid Nanopore Genome Sequencing in a Critical Care Setting.N Engl J Med2022
35347328Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing.Nat Biotechnol2022
35720974PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions.Cell Genom2022
35483961A complete pedigree-based graph workflow for rare candidate variant analysis.Genome Res2022
36514120Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.Genome Biol2022
35133172Ultra-Rapid Nanopore Whole Genome Genetic Diagnosis of Dilated Cardiomyopathy in an Adolescent With Cardiogenic Shock.Circ Genom Precis Med2022
33399819Accurate, scalable cohort variant calls using DeepVariant and GLnexus.Bioinformatics2021
34914532Pangenomics enables genotyping of known structural variants in 5202 diverse genomes.Science2021
34930391Hidden biases in germline structural variant detection.Genome Biol2021
34725481Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.Nat Methods2021
32559231A crowdsourced set of curated structural variants for the human genome.PLoS Comput Biol2020
33347570Parliament2: Accurate structural variant calling at scale.Gigascience2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32541955A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
31406327Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.Nat Biotechnol2019
29074945Analysis commons, a team approach to discovery in a big-data environment for genetic epidemiology.Nat Genet2017
27612449A hybrid computational strategy to address WGS variant analysis in >5000 samples.BMC Bioinformatics2016
26395054WGSA: an annotation pipeline for human genome sequencing studies.J Med Genet2016
25886820Assessing structural variation in a personal genome-towards a human reference diploid genome.BMC Genomics2015
26110529Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes.PLoS One2015
24475911Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline.BMC Bioinformatics2014
24874868T-DNA-induced chromosomal translocations in feronia and anxur2 mutants reveal implications for the mechanism of collapsed pollen due to chromosomal rearrangements.Mol Plant2014
24306866Identification and use of fluorescent dyes for plant cell wall imaging using high-throughput screening.Methods Mol Biol2014
23663246Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.).Genome Biol2013
22430844Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis.Plant Physiol2012
23027943XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan.Proc Natl Acad Sci U S A2012
22926318Complexes with mixed primary and secondary cellulose synthases are functional in Arabidopsis plants.Plant Physiol2012
22629257Understanding Plant Cellulose Synthases through a Comprehensive Investigation of the Cellulose Synthase Family Sequences.Front Plant Sci2011
19965966Real-time imaging of cellulose reorientation during cell wall expansion in Arabidopsis roots.Plant Physiol2010
20616083Identification of a cellulose synthase-associated protein required for cellulose biosynthesis.Proc Natl Acad Sci U S A2010
20394731Raman imaging of cell wall polymers in Arabidopsis thaliana.Biochem Biophys Res Commun2010
19014348Cellulosic biofuels.Annu Rev Plant Biol2009
19641030Mutations in UDP-Glucose:sterol glucosyltransferase in Arabidopsis cause transparent testa phenotype and suberization defect in seeds.Plant Physiol2009
19526248Label-free in situ imaging of lignification in the cell wall of low lignin transgenic Populus trichocarpa.Planta2009
17878302Genetic evidence for three unique components in primary cell-wall cellulose synthase complexes in Arabidopsis.Proc Natl Acad Sci U S A2007
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Collaborators

Fritz J Sedlazeck
Baylor College of Medicine
Co-authored papers 9
Benedict Paten
UC Santa Cruz Genomics Institute, University of California
Co-authored papers 8
Richard A Gibbs
Baylor College of Medicine
Co-authored papers 7
Miten Jain
Northeastern University
Co-authored papers 6
Eric Boerwinkle
Baylor College of Medicine
Co-authored papers 6
Justin M Zook
National Institute of Standards and Technology
Co-authored papers 5
Aaron M Wenger
Stanford School of Medicine
Co-authored papers 5
Michael C Schatz
Johns Hopkins University
Co-authored papers 5
Adam C English
Baylor College of Medicine Human Genome Sequencing Center
Co-authored papers 4
Jean Monlong
Co-authored papers 4
Manfred Auer
Southeast University
Co-authored papers 4
Sayed Mohammad Ebrahim Sahraeian
Roche Sequencing Solutions Inc.
Co-authored papers 4
Chunlin Xiao
Chongqing Aier Eye Hospital
Co-authored papers 4
Nathan D Olson
National Institute of Standards and Technology
Co-authored papers 4
Dianna G Fisk
Stanford Medicine Clinical Genomics Program
Co-authored papers 3
Christopher E Mason
Feil Family Brain and Mind Research Institute.
Co-authored papers 3
Marc Salit
Stanford University
Co-authored papers 3
Noah Alexander
David Geffen School of Medicine, university of california los angeles
Co-authored papers 3
Sergey Koren
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 3
Jonathan A Bernstein
Stanford University
Co-authored papers 3
Tobias Marschall
Center for Digital Medicine, Heinrich Heine University Dusseldorf
Co-authored papers 3
Adam M Phillippy
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 3
Megan E Grove
Stanford Medicine Clinical Genomics Program
Co-authored papers 3
Noah Spies
Stanford University
Co-authored papers 3
Ashok Veeraraghavan
Rice University
Co-authored papers 3
Euan A Ashley
Stanford University
Co-authored papers 3
Nancy F Hansen
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
Ryan E Mills
University of Michigan Medical School ann arbor
Co-authored papers 2
Camir Ricketts
Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University
Co-authored papers 2
Alexandre Rouette
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