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Author Details

Michael J MacCoss
University of Washington
1995
283
78
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36165806TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies.J Proteome Res2023
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
36165806TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies.J Proteome Res2023
37932399METLIN-CCS: an ion mobility spectrometry collision cross section database.Nat Methods2023
37952157Skeletal muscle TFEB signaling promotes central nervous system function and reduces neuroinflammation during aging and neurodegenerative disease.Cell Rep2023
37683181Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition.J Proteome Res2023
36778398Elamipretide Improves ADP Sensitivity in Aged Mitochondria by Increasing Uptake through the Adenine Nucleotide Translocator (ANT).bioRxiv2023
37279935Metrologically Traceable Quantification of 3 Apolipoprotein E Isoforms in Cerebrospinal Fluid.Clin Chem2023
36899164Sampling the proteome by emerging single-molecule and mass spectrometry methods.Nat Methods2023
37462785The mitochondrially targeted peptide elamipretide (SS-31) improves ADP sensitivity in aged mitochondria by increasing uptake through the adenine nucleotide translocator (ANT).Geroscience2023
37398334Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data Independent Acquisition.bioRxiv2023
36629399Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline.J Proteome Res2023
37059743A peptide-centric quantitative proteomics dataset for the phenotypic assessment of Alzheimer's disease.Sci Data2023
36864200Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments.Nat Methods2023
37173305Brain proteomic analysis implicates actin filament processes and injury response in resilience to Alzheimer's disease.Nat Commun2023
36993225MBNL1 regulates programmed postnatal switching between regenerative and differentiated cardiac states.bioRxiv2023
36598107The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data.J Proteome Res2023
37527417Dynamic Data-Independent Acquisition Mass Spectrometry with Real-Time Retrospective Alignment.Anal Chem2023
37527417Dynamic Data-Independent Acquisition Mass Spectrometry with Real-Time Retrospective Alignment.Anal Chem2023
37952157Skeletal muscle TFEB signaling promotes central nervous system function and reduces neuroinflammation during aging and neurodegenerative disease.Cell Rep2023
37932399METLIN-CCS: an ion mobility spectrometry collision cross section database.Nat Methods2023
37683181Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition.J Proteome Res2023
37059743A peptide-centric quantitative proteomics dataset for the phenotypic assessment of Alzheimer's disease.Sci Data2023
36993225MBNL1 regulates programmed postnatal switching between regenerative and differentiated cardiac states.bioRxiv2023
37279935Metrologically Traceable Quantification of 3 Apolipoprotein E Isoforms in Cerebrospinal Fluid.Clin Chem2023
37173305Brain proteomic analysis implicates actin filament processes and injury response in resilience to Alzheimer's disease.Nat Commun2023
37398334Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data Independent Acquisition.bioRxiv2023
37462785The mitochondrially targeted peptide elamipretide (SS-31) improves ADP sensitivity in aged mitochondria by increasing uptake through the adenine nucleotide translocator (ANT).Geroscience2023
36778398Elamipretide Improves ADP Sensitivity in Aged Mitochondria by Increasing Uptake through the Adenine Nucleotide Translocator (ANT).bioRxiv2023
36899164Sampling the proteome by emerging single-molecule and mass spectrometry methods.Nat Methods2023
36864200Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments.Nat Methods2023
36598107The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data.J Proteome Res2023
36629399Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline.J Proteome Res2023
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
34818016Does Data-Independent Acquisition Data Contain Hidden Gems? A Case Study Related to Alzheimer's Disease.J Proteome Res2022
35906802A Targeted Liquid Chromatography-Tandem Mass Spectrometry Method for Simultaneous Quantification of Peptides from the Carboxyl-terminal Region of Type III Procollagen, Biomarkers of Collagen Turnover.Clin Chem2022
35654359New Views of Old Proteins: Clarifying the Enigmatic Proteome.Mol Cell Proteomics2022
35512256Tandem Mass Spectrometry-Based Amyloid Typing Using Manual Microdissection and Open-Source Data Processing.Am J Clin Pathol2022
35831612Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions.Nat Protoc2022
35734440Multiplexed quantification of insulin and C-peptide by LC-MS/MS without the use of antibodies.J Mass Spectrom Adv Clin Lab2022
35549345Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data.J Proteome Res2022
35416576Age-related disruption of the proteome and acetylome in mouse hearts is associated with loss of function and attenuated by elamipretide (SS-31) and nicotinamide mononucleotide (NMN) treatment.Geroscience2022
35794471A male steroid controls female sexual behaviour in the malaria mosquito.Nature2022
36322234Elamipretide effects on the skeletal muscle phosphoproteome in aged female mice.Geroscience2022
36317158Serum plays an important role in reprogramming the seasonal transcriptional profile of brown bear adipocytes.iScience2022
35716664Cullin-independent recognition of HHARI substrates by a dynamic RBR catalytic domain.Structure2022
34919405Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline.J Proteome Res2022
34738832Host Plant Adaptation Drives Changes in <i>Diaphorina citri</i> Proteome Regulation, Proteoform Expression, and Transmission of '<i>Candidatus</i> Liberibacter asiaticus', the Citrus Greening Pathogen.Phytopathology2022
35252194Mitochondrial Inorganic Polyphosphate (polyP) Is a Potent Regulator of Mammalian Bioenergetics in SH-SY5Y Cells: A Proteomics and Metabolomics Study.Front Cell Dev Biol2022
35217690Activity dependent dissociation of the Homer1 interactome.Sci Rep2022
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Collaborators

Brendan MacLean
Co-authored papers 42
William Stafford Noble
Co-authored papers 28
Christine C Wu
University of Washington
Co-authored papers 27
Richard S Johnson
University of Washington-Genome Sciences
Co-authored papers 24
Peter S Rabinovitch
Co-authored papers 23
Trisha N Davis
University of Washington
Co-authored papers 19
Michael R Hoopmann
Institute for Systems Biology
Co-authored papers 18
John R Yates
TheScripps Research Institute
Co-authored papers 17
Alex Zelter
University of Washington
Co-authored papers 17
Michael Riffle
University of Washington
Co-authored papers 15
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Co-authored papers 15
Andrew N Hoofnagle
Co-authored papers 13
Steven A Carr
Broad Institute of MIT and Harvard
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Institute for Systems Biology
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Daniel C Liebler
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Susan E Abbatiello
The Barnett Institute of Chemical and Biological Analysis, Northeastern University
Co-authored papers 6
Andrew B Stergachis
University of Washington School of Medicine
Co-authored papers 6
Olga Vitek
Khoury College of Computer Sciences, Northeastern University
Co-authored papers 6
David G Hall
US Department of Agriculture
Co-authored papers 6
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 5
Amanda G Paulovich
Co-authored papers 5
Thomas J Montine
Stanford University
Co-authored papers 5
Deepak Mani
Co-authored papers 5
Release 1.2