Author details

Full Name

Kristina Hanspers

Affiliation

Gladstone Institutes

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37941138	WikiPathways 2024: next generation pathway database.	Nucleic Acids Res	2024
37131885	BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs.	ArXiv	2023
37707514	BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs.	Bioinformatics	2023
37900350	An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges.	J Clin Transl Sci	2023
37648854	CRISPR screens decode cancer cell pathways that trigger Î³Î´ T cell detection.	Nature	2023
33211851	WikiPathways: connecting communities.	Nucleic Acids Res	2021
34939300	COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.	Mol Syst Biol	2021
34411100	Ten simple rules for creating reusable pathway models for computational analysis and visualization.	PLoS Comput Biol	2021
34664389	COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.	Mol Syst Biol	2021
32180547	Wikidata as a knowledge graph for the life sciences.	Elife	2020
33168034	Pathway information extracted from 25 years of pathway figures.	Genome Biol	2020
32661365	Author Correction: Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation.	Nat Immunol	2020
32284594	Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation.	Nat Immunol	2020
30951672	exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.	Cell	2019
29136241	WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research.	Nucleic Acids Res	2018
30323343	Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration.	Nat Immunol	2018
29438982	MicroRNAs Associated With Reverse Left Ventricular Remodeling in Humans Identify Pathways of Heart Failure Progression.	Circ Heart Fail	2018
28183786	Extracellular RNAs Are Associated With Insulin Resistance and Metabolic Phenotypes.	Diabetes Care	2017
27203685	Reactome from a WikiPathways Perspective.	PLoS Comput Biol	2016
26481357	WikiPathways: capturing the full diversity of pathway knowledge.	Nucleic Acids Res	2016
23749961	NOA: a cytoscape plugin for network ontology analysis.	Bioinformatics	2013
22096230	WikiPathways: building research communities on biological pathways.	Nucleic Acids Res	2012
22743224	GO-Elite: a flexible solution for pathway and ontology over-representation.	Bioinformatics	2012
22576176	Mosaic: making biological sense of complex networks.	Bioinformatics	2012
20047655	The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services.	BMC Bioinformatics	2010
19649250	Mining biological pathways using WikiPathways web services.	PLoS One	2009
19893621	Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors.	PLoS Comput Biol	2009
18651794	WikiPathways: pathway editing for the people.	PLoS Biol	2008
18817533	Presenting and exploring biological pathways with PathVisio.	BMC Bioinformatics	2008
17588266	GenMAPP 2: new features and resources for pathway analysis.	BMC Bioinformatics	2007
17947979	Integration of biological networks and gene expression data using Cytoscape.	Nat Protoc	2007
17637833	Modeling insertional mutagenesis using gene length and expression in murine embryonic stem cells.	PLoS One	2007
16601082	A system-based approach to interpret dose- and time-dependent microarray data: quantitative integration of gene ontology analysis for risk assessment.	Toxicol Sci	2006
15847692	Increased DNA microarray hybridization specificity using sscDNA targets.	BMC Genomics	2005
15210650	Gene expression profiles during human CD4+ T cell differentiation.	Int Immunol	2004
12805270	Spotted long oligonucleotide arrays for human gene expression analysis.	Genome Res	2003
11681495	Treatment with sulfatide or its precursor, galactosylceramide, prevents diabetes in NOD mice.	Autoimmunity	2001

1 - 37 of 37

Daniel J B Clarke

Icahn School of Medicine at Mount Sinai

Career Start Year 2018

Number of shared co-authors 0

Daniel Domingo-Fern??ndez

Fraunhofer Institute for Algorithms and Scientific Computing (SCAI)

Career Start Year 2017

Number of shared co-authors 3

Charles Tapley Hoyt

Harvard Medical School

Career Start Year 2014

Number of shared co-authors 16

Zongliang Yue

University of Alabama at Birmingham, USA Informatics Institute

Career Start Year 2014

Number of shared co-authors 0

Zichen Wang

Icahn School of Medicine at Mount Sinai

Career Start Year 2013

Number of shared co-authors 1

Giuseppe Agapito

Data Analytics Research Center, University Magna Graecia of Catanzaro

Career Start Year 2012

Number of shared co-authors 0

Arjun Krishnan

Michigan State University

Career Start Year 2007

Number of shared co-authors 0

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 6

Hai Fang

University of Bristol

Career Start Year 2006

Number of shared co-authors 6

Andrey Alexeyenko

Karolinska Institutet

Career Start Year 2006

Number of shared co-authors 0

Dexter Pratt (CM4AI)

UC San Diego

Career Start Year 2006

Number of shared co-authors 13

Sherry L Jenkins

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 1

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 3

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 1

Stephen A Ramsey

Oregon State University

Career Start Year 2004

Number of shared co-authors 10

Jake Y. Chen (CM4AI)

University of Alabama at Birmingham

Career Start Year 2003

Number of shared co-authors 0

Andrey Sivachenko

Cystic Fibrosis Foundation

Career Start Year 2003

Number of shared co-authors 1

Tanusya M Murali

Yong Loo Lin School of Medicine, National University of Singapore

Career Start Year 2003

Number of shared co-authors 0

Ugur Dogrusoz

Bilkent University

Career Start Year 2002

Number of shared co-authors 16

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 0

Hedi Peterson

Institute of Computer Science, University of Tartu

Career Start Year 2000

Number of shared co-authors 3

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 4

Ralf Herwig

Max Planck Institute for Molecular Genetics

Career Start Year 1998

Number of shared co-authors 4

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 3

Paul Shannon

Institute for Systems Biology

Career Start Year 1998

Number of shared co-authors 7

Jaak Vilo

Institute of Computer Science, University of Tartu

Career Start Year 1996

Number of shared co-authors 2

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 19

Jill P Mesirov

University of California San Diego

Career Start Year 1992

Number of shared co-authors 4

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 3

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 6

row(s) 1 - 30 of 30

Alexander R Pico

Institute of Data Science and Biotechnology, Gladstone Institutes

Co-authored papers 27

Chris T Evelo

Maastricht University

Co-authored papers 14

Bruce R Conklin

Gladstone Institutes

Co-authored papers 10

Egon L Willighagen

Maastricht University

Co-authored papers 7

Andra Waagmeester

Maastricht University

Co-authored papers 6

Thomas Kelder

Maastricht University

Co-authored papers 5

Anke Meyer-Franke

Gladstone Institutes

Co-authored papers 3

Robin Haw

Ontario Institute for Cancer Research

Co-authored papers 3

Allan Kuchinsky

Co-authored papers 3

Henning Hermjakob

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 3

Jae K Ryu

Gladstone Institutes

Co-authored papers 3

Scott S Zamvil

Weill Institute for Neurosciences, University of California san francisco

Co-authored papers 3

Andrew I Su

The Scripps Research Institute

Co-authored papers 3

Katerina Akassoglou

Gladstone Institute for Neurological Disease San Francisco

Co-authored papers 3

Chris Sander

Broad Institute of MIT and Harvard

Co-authored papers 3

Roger Stephan

Ontario Institute for Cancer Research

Co-authored papers 3

Andrew S Mendiola

The University of Texas at San Antonio

Co-authored papers 3

Karen Rothfels

Co-authored papers 2

Chunlei Wu

The Scripps Research Institute

Co-authored papers 2

Luana Licata

University of Tor Vergata

Co-authored papers 2

Cristoffer Sevilla

Co-authored papers 2

Augustin Luna

Harvard Medical School

Co-authored papers 2

Ozgun Babur

Houston Methodist Research Institute

Co-authored papers 2

Marc Gillespie

Ontario Institute for Cancer Research

Co-authored papers 2

Zhaoqi Yan

University of Illinois College of Medicine Rockford

Co-authored papers 2

Aurelien Dugourd

Institute of Experimental Medicine and Systems Biology, RWTH Aachen University

Co-authored papers 2

Reinhard Schneider

Co-authored papers 2

Carole Goble

University of Manchester

Co-authored papers 2

Dong Xu

University of Missouri

Co-authored papers 2

Chunlei Wu

The Scripps Research Institute

Co-authored papers 2

1 - 30

Author Details

Column Actions

Recommended Authors

Collaborators