Author details

Full Name

Gergely Csaba

Affiliation

Ludwig-Maximilians-Universitat Munchen

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36223592	Human genetic defects in SRP19 and SRPRA cause severe congenital neutropenia with distinctive proteome changes.	Blood	2023
36223592	Human genetic defects in SRP19 and SRPRA cause severe congenital neutropenia with distinctive proteome changes.	Blood	2023
32026945	Toward a gold standard for benchmarking gene set enrichment analysis.	Brief Bioinform	2021
32026945	Toward a gold standard for benchmarking gene set enrichment analysis.	Brief Bioinform	2021
30759193	Comparison of six breast cancer classifiers using qPCR.	Bioinformatics	2019
31636702	A transcriptional response of <i>Clostridium beijerinckii</i> NRRL B-598 to a butanol shock.	Biotechnol Biofuels	2019
31875563	The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing Proteins.	Cell Rep	2019
30821814	YESdb: integrative analysis of environmental stress in yeast.	Database (Oxford)	2019
31235637	MS-EmpiRe Utilizes Peptide-level Noise Distributions for Ultra-sensitive Detection of Differentially Expressed Proteins.	Mol Cell Proteomics	2019
30759193	Comparison of six breast cancer classifiers using qPCR.	Bioinformatics	2019
30793903	Multi-Reference Spectral Library Yields Almost Complete Coverage of Heterogeneous LC-MS/MS Data Sets.	J Proteome Res	2019
31875563	The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing Proteins.	Cell Rep	2019
31636702	A transcriptional response of <i>Clostridium beijerinckii</i> NRRL B-598 to a butanol shock.	Biotechnol Biofuels	2019
31235637	MS-EmpiRe Utilizes Peptide-level Noise Distributions for Ultra-sensitive Detection of Differentially Expressed Proteins.	Mol Cell Proteomics	2019
30793903	Multi-Reference Spectral Library Yields Almost Complete Coverage of Heterogeneous LC-MS/MS Data Sets.	J Proteome Res	2019
30821814	YESdb: integrative analysis of environmental stress in yeast.	Database (Oxford)	2019
29980665	miR-103 promotes endothelial maladaptation by targeting lncWDR59.	Nat Commun	2018
29980665	miR-103 promotes endothelial maladaptation by targeting lncWDR59.	Nat Commun	2018
28165113	RelExplain-integrating data and networks to explain biological processes.	Bioinformatics	2017
28165113	RelExplain-integrating data and networks to explain biological processes.	Bioinformatics	2017
26791995	Bioconductor's EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis.	BMC Bioinformatics	2016
26791995	Bioconductor's EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis.	BMC Bioinformatics	2016
26953259	Regulatory Implications of Non-Trivial Splicing: Isoform 3 of Rab1A Shows Enhanced Basal Activity and Is Not Controlled by Accessory Proteins.	J Mol Biol	2016
27531933	Resolving Lipid Mediators Maresin 1 and Resolvin D2 Prevent Atheroprogression in Mice.	Circ Res	2016
27723775	Evaluating Transcription Factor Activity Changes by Scoring Unexplained Target Genes in Expression Data.	PLoS One	2016
27723775	Evaluating Transcription Factor Activity Changes by Scoring Unexplained Target Genes in Expression Data.	PLoS One	2016
27531933	Resolving Lipid Mediators Maresin 1 and Resolvin D2 Prevent Atheroprogression in Mice.	Circ Res	2016
26953259	Regulatory Implications of Non-Trivial Splicing: Isoform 3 of Rab1A Shows Enhanced Basal Activity and Is Not Controlled by Accessory Proteins.	J Mol Biol	2016
25928589	ContextMap 2: fast and accurate context-based RNA-seq mapping.	BMC Bioinformatics	2015
25928589	ContextMap 2: fast and accurate context-based RNA-seq mapping.	BMC Bioinformatics	2015
26469855	Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae.	PLoS One	2015
26469855	Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae.	PLoS One	2015
24019895	Mining RNA-seq data for infections and contaminations.	PLoS One	2013
24019895	Mining RNA-seq data for infections and contaminations.	PLoS One	2013
23873954	A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae.	Nucleic Acids Res	2013
23873954	A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae.	Nucleic Acids Res	2013
22537048	A context-based approach to identify the most likely mapping for RNA-seq experiments.	BMC Bioinformatics	2012
22537048	A context-based approach to identify the most likely mapping for RNA-seq experiments.	BMC Bioinformatics	2012
21685094	From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems.	Bioinformatics	2011
21685094	From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems.	Bioinformatics	2011
20233441	miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature.	BMC Bioinformatics	2010
20823310	Vorescore--fold recognition improved by rescoring of protein structure models.	Bioinformatics	2010
20233441	miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature.	BMC Bioinformatics	2010
20823310	Vorescore--fold recognition improved by rescoring of protein structure models.	Bioinformatics	2010
19374763	Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis.	BMC Struct Biol	2009
19374763	Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis.	BMC Struct Biol	2009
18055499	Alternative splicing and protein structure evolution.	Nucleic Acids Res	2008
18055499	Alternative splicing and protein structure evolution.	Nucleic Acids Res	2008
18689847	Protein structure alignment considering phenotypic plasticity.	Bioinformatics	2008
18689847	Protein structure alignment considering phenotypic plasticity.	Bioinformatics	2008

1 - 50 of 52

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 0

Alberto Paccanaro

University of London

Career Start Year 2005

Number of shared co-authors 0

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 0

Mario Albrecht

Institute for Knowledge Discovery, Graz University of Technology

Career Start Year 2002

Number of shared co-authors 1

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 0

Alberto Pascual-Montano

National Center for Biotechnology-CSIC

Career Start Year 2001

Number of shared co-authors 0

Carlos Prieto

Hospital Rey Juan Carlos

Career Start Year 2000

Number of shared co-authors 1

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Career Start Year 2000

Number of shared co-authors 0

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 1

Kevin Bryson

University of Glasgow

Career Start Year 1999

Number of shared co-authors 0

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 0

Frederick P Roth

University of Toronto

Career Start Year 1998

Number of shared co-authors 0

Benno Schwikowski

Center for Bioinformatics, Institut Pasteur CNRS

Career Start Year 1997

Number of shared co-authors 0

Asa Ben-Hur

Colorado State University

Career Start Year 1996

Number of shared co-authors 0

Christopher T Workman

Technical University of Denmark

Career Start Year 1995

Number of shared co-authors 1

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 1

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 1

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 1

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 0

Edward M Marcotte

University of Texas

Career Start Year 1993

Number of shared co-authors 1

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 0

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 2

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 0

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 0

Javier De Las Rivas

Cancer Research Centre (IBMCC/CSIC/USAL/IBSAL)

Career Start Year 1989

Number of shared co-authors 2

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 4

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 2

Chris Sander

Broad Institute of MIT and Harvard

Career Start Year 1979

Number of shared co-authors 0

Joaqu??n Dopazo

Andalusian Public Foundation Progress and Health-FPS

Career Start Year 1977

Number of shared co-authors 3

row(s) 1 - 30 of 30

Ralf Zimmer

Ludwig-Maximilians-Universitat Munchen

Co-authored papers 26

Ludwig Geistlinger

Center for Computational Biomedicine, Harvard Medical School

Co-authored papers 4

Caroline C Friedel

Institute of Informatics, Ludwig-Maximilians-Universitat Munchen

Co-authored papers 3

Christoph Klein

Kinderklinik und Kinderpoliklinik der Ludwig-Maximilians-Universitat Munchen

Co-authored papers 1

Tim Jeske

Dr. von Hauner Children's Hospital

Co-authored papers 1

Juri Rappsilber

Institute for Biotechnology, Technical University Berlin

Co-authored papers 1

Maximilian Hastreiter

Dr. von Hauner Children's Hospital

Co-authored papers 1

Nicola Mulder

University of Cape Town

Co-authored papers 1

Oliver F Lange

Center for Integrated Protein Science, Technische Universitat Munchen

Co-authored papers 1

Nitesh Turaga

The University of Melbourne

Co-authored papers 1

Fabian Hauck

Department of Pediatrics at the Dr. von Hauner Children's Hospital

Co-authored papers 1

Marcel Ramos

Graduate School of Public Health and Health Policy, City University of New York

Co-authored papers 1

Lucas Schiffer

Boston University

Co-authored papers 1

Martin Morgan

Roswell Park Comprehensive Cancer Center

Co-authored papers 1

Levi Waldron

City University of New York School of Public Health

Co-authored papers 1

Martin Zacharias

Co-authored papers 1

Mara Santarelli

Institute for Bioinformatics, Ludwig-Maximilians-Universitat Munchen

Co-authored papers 1

Vincent J Carey

Brigham and Women's Hospital, Harvard Medical School

Co-authored papers 1

Sean Davis

Johns Hopkins School of Medicine, National Cancer Institute, Princeton University, University of Colorado Anschutz Medical Campus, University of Pittsburgh, University of Washington

Co-authored papers 1

Susan R Davis

Co-authored papers 1

Charity W Law

The Walter and Eliza Hall Institute of Medical Research

Co-authored papers 1

1 - 21

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