Author details

Full Name

Brian D Athey

Affiliation

University of Michigan Medical School ann arbor

ORCID

Career Start Year

1977

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36591248	A new framework for host-pathogen interaction research.	Front Immunol	2022
33993014	Automated detection of acute respiratory distress syndrome from chest X-Rays using Directionality Measure and deep learning features.	Comput Biol Med	2021
33909457	Valproic acid-induced changes of 4D nuclear morphology in astrocyte cells.	Mol Biol Cell	2021
32533075	CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis.	Sci Data	2020
33059612	Robust segmentation of lung in chest x-ray: applications in analysis of acute respiratory distress syndrome.	BMC Med Imaging	2020
31530573	Druggable Transcriptional Networks in the Human Neurogenic Epigenome.	Pharmacol Rev	2019
29251706	Valproic acid induces prosurvival transcriptomic changes in swine subjected to traumatic injury and hemorrhagic shock.	J Trauma Acute Care Surg	2018
30209281	3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification.	Sci Rep	2018
30367081	Publisher Correction: 3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification.	Sci Rep	2018
29697304	Deep learning in pharmacogenomics: from gene regulation to patient stratification.	Pharmacogenomics	2018
29400612	The pharmacoepigenomics informatics pipeline defines a pathway of novel and known warfarin pharmacogenomics variants.	Pharmacogenomics	2018
28271248	Network Reconstruction Reveals that Valproic Acid Activates Neurogenic Transcriptional Programs in Adult Brain Following Traumatic Injury.	Pharm Res	2017
28385536	Mining the topography and dynamics of the 4D Nucleome to identify novel CNS drug pathways.	Methods	2017
26690871	Stress and glucocorticoid receptor transcriptional programming in time and space: Implications for the brain-gut axis.	Neurogastroenterol Motil	2016
27003817	Linking MedDRA(Â®)-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors.	Drug Saf	2016
26338265	The epigenome, 4D nucleome and next-generation neuropsychiatric pharmacogenomics.	Pharmacogenomics	2015
26343379	A glutamatergic network mediates lithium response in bipolar disorder as defined by epigenome pathway analysis.	Pharmacogenomics	2015
26340055	Epigenomic mapping and effect sizes of noncoding variants associated with psychotropic drug response.	Pharmacogenomics	2015
24713438	MetDisease--connecting metabolites to diseases via literature.	Bioinformatics	2014
25852852	CLO: The cell line ontology.	J Biomed Semantics	2014
24303286	tranSMART: An Open Source and Community-Driven Informatics and Data Sharing Platform for Clinical and Translational Research.	AMIA Jt Summits Transl Sci Proc	2013
22101971	The NIH National Center for Integrative Biomedical Informatics (NCIBI).	J Am Med Inform Assoc	2012
23209624	Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines.	PLoS One	2012
22492643	Metab2MeSH: annotating compounds with medical subject headings.	Bioinformatics	2012
22668750	Researchers' needs for resource discovery and collaboration tools: a qualitative investigation of translational scientists.	J Med Internet Res	2012
22609907	Needs for an expanded ontology-based classification of adverse drug reactions and related mechanisms.	Clin Pharmacol Ther	2012
22135418	Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.	Bioinformatics	2012
20955817	The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research.	J Biomed Inform	2011
21342567	Integrated metabolome and transcriptome analysis of the NCI60 dataset.	BMC Bioinformatics	2011
20007254	ConceptGen: a gene set enrichment and gene set relation mapping tool.	Bioinformatics	2010
21088028	GSearcher: agile attribute querying for biological networks.	Bioinformatics	2010
21143788	Cross-domain neurobiology data integration and exploration.	BMC Genomics	2010
21143775	2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research.	BMC Genomics	2010
20205738	Unified translation repression mechanism for microRNAs and upstream AUGs.	BMC Genomics	2010
20139469	Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks.	Bioinformatics	2010
19850754	The gputools package enables GPU computing in R.	Bioinformatics	2010
18326507	MiSearch adaptive pubMed search tool.	Bioinformatics	2009
20700476	Interactive Design Strategy for a Multi-Functional PAMAM Dendrimer-Based Nano-Therapeutic Using Computational Models and Experimental Analysis.	J Comput Theor Nanosci	2009
19594867	High-throughput next-generation sequencing technologies foster new cutting-edge computing techniques in bioinformatics.	BMC Genomics	2009
19717803	The University of Michigan Honest Broker: a Web-based service for clinical and translational research and practice.	J Am Med Inform Assoc	2009
19336450	New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites.	Genome Res	2009
19426463	Open Biomedical Ontology-based Medline exploration.	BMC Bioinformatics	2009
19550198	Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs.	Acad Med	2009
18978014	Michigan molecular interactions r2: from interacting proteins to pathways.	Nucleic Acids Res	2009
18208839	Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG).	Nucleic Acids Res	2008
21347131	A diagram editor for efficient biomedical knowledge capture and integration.	Summit Transl Bioinform	2008
18849319	A bioinformatics analysis of the cell line nomenclature.	Bioinformatics	2008
18999086	Delivering informatics capabilities to an AHC research community through public/private partnerships (PPP).	AMIA Annu Symp Proc	2008
18509477	iTools: a framework for classification, categorization and integration of computational biology resources.	PLoS One	2008
17130145	Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together.	Nucleic Acids Res	2007

1 - 50 of 76

Kathleen M Fisch

Center for Computational Biology and Bioinformatics, University of California

Career Start Year 2009

Number of shared co-authors 1

Jihoon Kim

university of california san diego

Career Start Year 2009

Number of shared co-authors 1

Khader Shameer

School of Public Health, Imperial College London

Career Start Year 2006

Number of shared co-authors 1

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Joel T Dudley

Institute for Next Generation Healthcare

Career Start Year 2006

Number of shared co-authors 1

Sherry L Jenkins

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 2

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 3

Anthony A Philippakis

Broad Institute of Harvard and the Massachusetts Institute of Technology

Career Start Year 2004

Number of shared co-authors 4

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 2

Zhandong Liu

Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital

Career Start Year 2003

Number of shared co-authors 0

Gil Alterovitz

Brigham and Women's Hospital

Career Start Year 2002

Number of shared co-authors 9

Eric W Klee

Mayo Clinic College of Medicine and Science

Career Start Year 2001

Number of shared co-authors 2

Andrew I Su

The Scripps Research Institute

Career Start Year 2001

Number of shared co-authors 5

Mikhail G Dozmorov

Virginia Commonwealth University

Career Start Year 2001

Number of shared co-authors 2

Shawn Levy

HudsonAlpha Institute for Biotechnology

Career Start Year 1999

Number of shared co-authors 4

Eric E Schadt

Icahn School of Medicine at Mount Sinai

Career Start Year 1998

Number of shared co-authors 5

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 1

Shannon K McWeeney

Oregon Health & Science University, University of California Berkeley

Career Start Year 1997

Number of shared co-authors 6

Michael R Barnes

William Harvey Research Institute, Queen Mary University of London

Career Start Year 1997

Number of shared co-authors 5

Barry Merriman

David Geffen School of Medicine, University of California los angeles

Career Start Year 1997

Number of shared co-authors 1

Wenzhong Xiao

Stanford University

Career Start Year 1997

Number of shared co-authors 1

Roland Eils

Berlin Institute of Health (BIH) and Charite

Career Start Year 1995

Number of shared co-authors 2

Sheng Zhong

Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University

Career Start Year 1994

Number of shared co-authors 1

Atul J Butte

Bakar Computational Health Sciences Institute, University of California san francisco

Career Start Year 1993

Number of shared co-authors 15

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 3

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 3

Peter J Tonellato

University of Missouri School of Medicine

Career Start Year 1989

Number of shared co-authors 2

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 8

Warren A Kibbe

Duke Clinical Research Institute, Duke University

Career Start Year 1987

Number of shared co-authors 9

Yves A Lussier

Center for Biomedical Informatics and Biostatistics, University of Arizona

Career Start Year 1971

Number of shared co-authors 6

row(s) 1 - 30 of 30

Gilbert S Omenn

and School of Public Health, University of Michigan ann arbor

Co-authored papers 10

David J States

OncProTech LLC

Co-authored papers 8

Andrew D Boyd

University of Illinois Chicago

Co-authored papers 6

Sirarat Sarntivijai

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 5

Yongqun He

University of Michigan Medical School ann arbor

Co-authored papers 5

Charles F Burant

Co-authored papers 5

Alexandr A Kalinin

Broad Institute of Harvard and MIT

Co-authored papers 4

Daniel J Clauw

Co-authored papers 3

Edward M Barbour

Center for Clinical and Translational Science, University of Illinois Chicago

Co-authored papers 2

Youping Deng

John A. Burns School of Medicine, University of Hawaii at Manoa

Co-authored papers 2

Kenneth J Pienta

The Brady Urological Institute, Johns Hopkins University School of Medicine

Co-authored papers 2

Hamid R Arabnia

University of Georgia

Co-authored papers 2

Jack Y Yang

Massachusetts General Hospital and Harvard Medical School

Co-authored papers 2

Zuoshuang Xiang

College of Literature, University of Michigan ann arbor

Co-authored papers 2

Edison Ong

University of Michigan Medical School ann arbor

Co-authored papers 2

Tim Hull

University of California

Co-authored papers 2

Mark A Musen

Stanford Center for Biomedical Informatics Research, Stanford University

Co-authored papers 2

Michael J Becich

University of Pittsburgh School of Medicine

Co-authored papers 2

Daniel L Rubin

Stanford University.

Co-authored papers 2

Lee A Green

University of Alberta

Co-authored papers 2

Richard H Scheuermann

J. Craig Venter Institute

Co-authored papers 1

David A Krusch

University of Rochester School of Medicine and Dentistry

Co-authored papers 1

William Bug

Drexel University College of Medicine

Co-authored papers 1

Isaac S Kohane

Harvard Medical School

Co-authored papers 1

Nicholas R Anderson

University of California davis

Co-authored papers 1

David Eichmann

The University of Iowa

Co-authored papers 1

Rakesh Nagarajan

Current or past members of the College of American Pathologists

Co-authored papers 1

Arif Ghafoor

Co-authored papers 1

Jack W Smith

Center for Biomedical Informatics, Texas A&M University Health Science Center

Co-authored papers 1

Mark Borodovsky

Georgia Institute of Technology

Co-authored papers 1

1 - 30

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