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Author Details

Tetsuro Toyoda
Advanced Center for Computing and Communication (ACCC)
1997
81
36
PMIDPaper TitleJournal TitlePublished Year
29137437DNA hypermethyation and silencing of <i>PITX1</i> correlated with advanced stage and poor postoperative prognosis of esophageal squamous cell carcinoma.Oncotarget2017
26976262A Stress-Activated Transposon in Arabidopsis Induces Transgenerational Abscisic Acid Insensitivity.Sci Rep2016
27493656Sm-Like Protein-Mediated RNA Metabolism Is Required for Heat Stress Tolerance in Arabidopsis.Front Plant Sci2016
27511731A Histone Methyltransferase ESET Is Critical for T Cell Development.J Immunol2016
25505007MOROKOSHI: transcriptome database in Sorghum bicolor.Plant Cell Physiol2015
26546227Functional and expression analyses of transcripts based on full-length cDNAs of Sorghum bicolor.DNA Res2015
26136597Loss of Arabidopsis 5'-3' Exoribonuclease AtXRN4 Function Enhances Heat Stress Tolerance of Plants Subjected to Severe Heat Stress.Plant Cell Physiol2015
25723102Gateways to the FANTOM5 promoter level mammalian expression atlas.Genome Biol2015
24057379Highly reproducible ChIP-on-chip analysis to identify genome-wide protein binding and chromatin status in Arabidopsis thaliana.Methods Mol Biol2014
25243128tasiRNA-ARF pathway moderates floral architecture in Arabidopsis plants subjected to drought stress.Biomed Res Int2014
24670764A promoter-level mammalian expression atlas.Nature2014
24364365Database construction for PromoterCAD: synthetic promoter design for mammals and plants.ACS Synth Biol2014
23341627Small open reading frames associated with morphogenesis are hidden in plant genomes.Proc Natl Acad Sci U S A2013
24091011SAM domain polymerization links subnuclear clustering of PRC1 to gene silencing.Dev Cell2013
23633602Integrated database of information from structural genomics experiments.Acta Crystallogr D Biol Crystallogr2013
23766287PromoterCAD: Data-driven design of plant regulatory DNA.Nucleic Acids Res2013
23761449PosMed: Ranking genes and bioresources based on Semantic Web Association Study.Nucleic Acids Res2013
23434913Scratch regulates neuronal migration onset via an epithelial-mesenchymal transition-like mechanism.Nat Neurosci2013
23169777Role of SOX17 in hematopoietic development from human embryonic stem cells.Blood2013
22147073Tissue-specific transcriptome analysis reveals cell wall metabolism, flavonol biosynthesis and defense responses are activated in the endosperm of germinating Arabidopsis thaliana seeds.Plant Cell Physiol2012
22844243Histone H2A mono-ubiquitination is a crucial step to mediate PRC1-dependent repression of developmental genes to maintain ES cell identity.PLoS Genet2012
22540040Surveillance of 3' Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis.G3 (Bethesda)2012
22319563ECOMICS: a web-based toolkit for investigating the biomolecular web in ecosystems using a trans-omics approach.PLoS One2012
22332235Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads.Bioinformatics2012
20736450Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.Mol Biol Evol2011
21632604Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases.Nucleic Acids Res2011
21601679Methods for open innovation on a genome-design platform associating scientific, commercial, and educational communities in synthetic biology.Methods Enzymol2011
21626211Origin and evolution of genes related to ABA metabolism and its signaling pathways.J Plant Res2011
21552333Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1.PLoS Genet2011
21613568Programmed induction of endoreduplication by DNA double-strand breaks in Arabidopsis.Proc Natl Acad Sci U S A2011
21753189The Hbo1-Brd1/Brpf2 complex is responsible for global acetylation of H3K14 and required for fetal liver erythropoiesis.Blood2011
21343615Genome-wide analysis of target genes regulated by HoxB4 in hematopoietic stem and progenitor cells developing from embryonic stem cells.Blood2011
21076152The RIKEN integrated database of mammals.Nucleic Acids Res2011
21075962MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.Plant Physiol2011
21227933ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses.Plant Cell Physiol2011
20088898Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays.Plant J2010
20516640Murine induced pluripotent stem cells can be derived from and differentiate into natural killer T cells.J Clin Invest2010
20466843Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.Plant Physiol2010
20646027Divergence of CpG island promoters: a consequence or cause of evolution?Dev Growth Differ2010
20387044Arabidopsis tiling array analysis to identify the stress-responsive genes.Methods Mol Biol2010
20010696Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana.EMBO J2010
20008477sORF finder: a program package to identify small open reading frames with high coding potential.Bioinformatics2010
19181858Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.Proc Natl Acad Sci U S A2009
20333209Evolutionary persistence of functional compensation by duplicate genes in Arabidopsis.Genome Biol Evol2009
19925682Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells.BMC Genomics2009
20041196Increased expression and protein divergence in duplicate genes is associated with morphological diversification.PLoS Genet2009
19633021Transcriptome analyses revealed diverse expression changes in ago1 and hyl1 Arabidopsis mutants.Plant Cell Physiol2009
19755104Polycomb limits the neurogenic competence of neural precursor cells to promote astrogenic fate transition.Neuron2009
19528193PosMed-plus: an intelligent search engine that inferentially integrates cross-species information resources for molecular breeding of plants.Plant Cell Physiol2009
19528066OmicBrowse: a Flash-based high-performance graphics interface for genomic resources.Nucleic Acids Res2009
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Collaborators

Norio Kobayashi
Co-authored papers 13
Kei Iida
Graduate School of Medicine, Kyoto University
Co-authored papers 12
Haruhiko Koseki
RIKEN Research Center for Allergy and Immunology
Co-authored papers 11
Koro Nishikata
Advanced Center for Computing and Communication (ACCC)
Co-authored papers 7
Hiroshi Masuya
BioResource Research Center
Co-authored papers 6
Shuji Kawaguchi
Center for Genomic Medicine, Kyoto University Graduate School of Medicine
Co-authored papers 6
Mitsuhiro Endoh
Institute of Molecular Embryology and Genetics (IMEG), Kumamoto University
Co-authored papers 6
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 5
Osamu Ohara
Co-authored papers 4
Yuki I Kawamura
Research Institute, National Center for Global Health and Medicine
Co-authored papers 3
Taeko Dohi
Research Institute, International Medical Center of Japan
Co-authored papers 3
Mariko Okada-Hatakeyama
Institute for Protein Research, Osaka University
Co-authored papers 3
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Atsushi Iwama
Co-authored papers 3
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 2
Albin Sandelin
University of Copenhagen
Co-authored papers 2
Peter A C 't Hoen
Radboud University Medical Center
Co-authored papers 2
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Shigeyuki Yokoyama
Shinshu University School of Medicine
Co-authored papers 2
Marina Lizio
Cerevance Ltd
Co-authored papers 2
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Mark Thompson
Leiden University Medical Center
Co-authored papers 2
Zuotian Tatum
Leiden University Medical Center
Co-authored papers 2
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Terrence F Meehan
European Bioinformatics Institute
Co-authored papers 2
Emmanuel Dimont
Harvard School of Public Health
Co-authored papers 2
Terue Takatsuki
Database Center for Life Science
Co-authored papers 2
Winston Hide
Harvard Medical School
Co-authored papers 2
Release 1.2