Author details

Full Name

Steven K Reilly

Affiliation

ORCID

Career Start Year

2012

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37104592	The functional and evolutionary impacts of human-specific deletions in conserved elements.	Science	2023
37104599	Evolutionary constraint and innovation across hundreds of placental mammals.	Science	2023
35051367	Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreak.	Cell	2022
34907347	Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows.	Nat Microbiol	2022
34662402	Detection of Neanderthal Adaptively Introgressed Genetic Variants That Modulate Reporter Gene Expression in Human Immune Cells.	Mol Biol Evol	2022
34475398	Functional characterization of T2D-associated SNP effects on baseline and ER stress-responsive Î² cell transcriptional activation.	Nat Commun	2021
34326544	Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH.	Nat Genet	2021
33758855	DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing.	bioRxiv	2021
33372131	Massively parallel discovery of human-specific substitutions that alter enhancer activity.	Proceedings of the National Academy of Sciences of the United States of America	2021
33303686	Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events.	Science	2021
34497403	Author Correction: Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH.	Nat Genet	2021
34704102	Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts.	medRxiv	2021
32869040	Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events.	medRxiv	2020
32144282	Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features.	Nat Commun	2020
29474912	Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.	Cell	2018
27114548	Origin and evolution of developmental enhancers in the mammalian neocortex.	Proceedings of the National Academy of Sciences of the United States of America	2016
27147089	Evolution of Gene Regulation in Humans.	Annual Review of Genomics and Human Genetics	2016
27259153	Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.	Cell	2016
25745175	Evolutionary genomics. Evolutionary changes in promoter and enhancer activity during human corticogenesis.	Science	2015
25752243	The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment.	Nat Commun	2015
23704192	The genomic landscape of cohesin-associated chromatin interactions.	Genome Res	2013
23827682	The evolution of lineage-specific regulatory activities in the human embryonic limb.	Cell	2013
24267886	Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism.	Cell	2013
22421546	Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb.	Genome Res	2012