Author details

Full Name

Stefani N Thomas

Affiliation

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36865788	Impact of VALID Act implementation on mass spectrometry-based clinical proteomic laboratory developed tests.		2023
35262095	The Serological Sciences Network (SeroNet) for COVID-19: Depth and Breadth of Serology Assays and Plans for Assay Harmonization.	medRxiv	2022
35765315	Mission, Organization, and Future Direction of the Serological Sciences Network for COVID-19 (SeroNet) Epidemiologic Cohort Studies.	Open Forum Infect Dis	2022
35703544	The Serological Sciences Network (SeroNet) for COVID-19: Depth and Breadth of Serology Assays and Plans for Assay Harmonization.	mSphere	2022
35614113	Ultrasensitive detection of salivary SARS-CoV-2 IgG antibodies in individuals with natural and COVID-19 vaccine-induced immunity.	Scientific Reports	2022
34958553	Proteomic Analysis Reveals Low-Dose PARP Inhibitor-Induced Differential Protein Expression in BRCA1-Mutated High-Grade Serous Ovarian Cancer Cells.	J Am Soc Mass Spectrom	2022
33826952	Transient hyperphosphatasemia following pediatric liver transplantation in a patient with hepatic and skeletal abnormalities.	Clinica Chimica Acta	2021
33539808	Initial determination of COVID-19 seroprevalence among outpatients and healthcare workers in Minnesota using a novel SARS-CoV-2 total antibody ELISA.	Clinical Biochemistry	2021
33746520	A 9-Month-Old with Skeletal Abnormalities and a Consanguineous Sibling with Mucopolysaccharidosis IVA: The Role of Urinary Glycosaminoglycan Testing in Disease Diagnosis and Treatment Monitoring.	Clinical Medicine Insights: Case Reports	2021
34063568	Quantitative Mass Spectrometry-Based Proteomics for Biomarker Development in Ovarian Cancer.	Molecules	2021
32791053	Method comparison of SARS-CoV-2 serology assays involving three commercially available platforms and a novel in-house developed enzyme-linked immunosorbent assay.	Clinical Biochemistry	2020
32534439	Orthogonal Proteomic Platforms and Their Implications for the Stable Classification of High-Grade Serous Ovarian Cancer Subtypes.	iScience	2020
31450505	Quantification of Tau Protein Lysine Methylation in Aging and Alzheimer's Disease.	Journal of Alzheimer's Disease	2019
31578285	Comparative analysis of the catalytic regulation of NEDD4-1 and WWP2 ubiquitin ligases.	J Biol Chem	2019
32100854	How Sweet It Is: The Coming of Age of Continuous Glucose Monitoring.	Clinical Chemistry	2019
31516400	-GlycositeAtlas: a database resource for mass spectrometry-based human N-linked glycoprotein and glycosylation site mapping.	Clinical Proteomics	2019
29988108	Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry.	Nat Protoc	2018
27975250	Mass Spectrometry Analysis of Lysine Posttranslational Modifications of Tau Protein from Alzheimer's Disease Brain.	Methods in Molecular Biology	2017
28866885	Targeted Proteomic Analyses of Histone H4 Acetylation Changes Associated with Homologous-Recombination-Deficient High-Grade Serous Ovarian Carcinomas.	J Proteome Res	2017
28505427	Modification of Sialic Acids on Solid Phase: Accurate Characterization of Protein Sialylation.	Analytical Chemistry	2017
28627880	Site-Specific Fucosylation Analysis Identifying Glycoproteins Associated with Aggressive Prostate Cancer Cell Lines Using Tandem Affinity Enrichments of Intact Glycopeptides Followed by Mass Spectrometry.	Anal Chem	2017
28827567	Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry.	Nat Commun	2017
29124938	Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues.	J Proteome Res	2017
27565203	Targeted proteomic assays for the verification of global proteomics insights.	Expert Review of Proteomics	2016
26751220	Advances in mass spectrometry-based clinical biomarker discovery.	Clin Proteomics	2016
27295432	Enzymatic Analysis of PTEN Ubiquitylation by WWP2 and NEDD4-1 E3 Ligases.	Biochemistry	2016
27372738	Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.	Cell	2016
27226612	Molecular Features of Phosphatase and Tensin Homolog (PTEN) Regulation by C-terminal Phosphorylation.	J Biol Chem	2016
26867747	Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.	Methods Mol Biol	2016
26719571	Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.	Clin Chem	2016
26019700	Application of quantitative proteomics to the integrated analysis of the ubiquitylated and global proteomes of xenograft tumor tissues.	Clinical Proteomics	2015
25805731	Type IV pilus secretins have extracellular C termini.	mBio	2015
26652794	MRMPlus: an open source quality control and assessment tool for SRM/MRM assay development.	BMC Bioinformatics	2015
26451657	Multiplexed Targeted Mass Spectrometry-Based Assays for the Quantification of N-Linked Glycosite-Containing Peptides in Serum.	Anal Chem	2015
24869773	Lysine methylation is an endogenous post-translational modification of tau protein in human brain and a modulator of aggregation propensity.	Biochemical Journal	2014
24860738	Exosomal Proteome Profiling: A Potential Multi-Marker Cellular Phenotyping Tool to Characterize Hypoxia-Induced Radiation Resistance in Breast Cancer.	Proteomes	2013
23431444	An Internal Standard-Assisted Synthesis and Degradation Proteomic Approach Reveals the Potential Linkage between VPS4B Depletion and Activation of Fatty Acid Î²-Oxidation in Breast Cancer Cells.	International Journal of Proteomics	2013
22033876	Dual modification of Alzheimer's disease PHF-tau protein by lysine methylation and ubiquitylation: a mass spectrometry approach.	Acta Neuropathologica	2012
22569412	Quantitative proteomic analysis of mitochondrial proteins reveals prosurvival mechanisms in the perpetuation of radiation-induced genomic instability.	Free Radic Biol Med	2012
22952233	Phosphorylation of serine 51 regulates the interaction of human DNA ligase I with replication factor C and its participation in DNA replication and repair.	Journal of Biological Chemistry	2012
22519468	IsoQuant: a software tool for stable isotope labeling by amino acids in cell culture-based mass spectrometry quantitation.	Analytical Chemistry	2012
21619060	Stable isotope labeling with amino acids in cell culture based mass spectrometry approach to detect transient protein interactions using substrate trapping.	Analytical Chemistry	2011
20058168	Proteomic analysis of protein phosphorylation and ubiquitination in Alzheimer's disease.	Methods in Molecular Biology	2009
18549264	PhosphoScan: a probability-based method for phosphorylation site prediction using MS2/MS3 pair information.	J Proteome Res	2008
17079232	Doxorubicin down-regulates Kruppel-associated box domain-associated protein 1 sumoylation that relieves its transcription repression on p21WAF1/CIP1 in breast cancer MCF-7 cells.	Journal of Biological Chemistry	2007
17705714	Advancing signaling networks through proteomics.	Expert Review of Proteomics	2007
17389470	Proteomic analysis of exfoliation deposits.	Invest Ophthalmol Vis Sci	2007
16443603	Alzheimer disease-specific conformation of hyperphosphorylated paired helical filament-Tau is polyubiquitinated through Lys-48, Lys-11, and Lys-6 ubiquitin conjugation.	Journal of Biological Chemistry	2006
16340081	Using proteomics and network analysis to elucidate the consequences of synaptic protein oxidation in a PS1 + AbetaPP mouse model of Alzheimer's disease.	Journal of Alzheimer's Disease	2005
15686472	Reduced neuronal expression of synaptic transmission modulator HNK-1/neural cell adhesion molecule as a potential consequence of amyloid beta-mediated oxidative stress: a proteomic approach.	J Neurochem	2005