Author details

Full Name

Daphne Koller

Affiliation

Stanford University

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
31538144	Inferring Multidimensional Rates of Aging from Cross-Sectional Data.	Proc Mach Learn Res	2019
31538144	Inferring Multidimensional Rates of Aging from Cross-Sectional Data.	Proc Mach Learn Res	2019
26992676	Correlation of preterm infant illness severity with placental histology.	Placenta	2016
26992676	Correlation of preterm infant illness severity with placental histology.	Placenta	2016
25970446	Sharing and Specificity of Co-expression Networks across 35 Human Tissues.	PLoS Comput Biol	2015
25970446	Sharing and Specificity of Co-expression Networks across 35 Human Tissues.	PLoS Comput Biol	2015
26352446	Parameter Estimation and Energy Minimization for Region-Based Semantic Segmentation.	IEEE Trans Pattern Anal Mach Intell	2015
26352446	Parameter Estimation and Energy Minimization for Region-Based Semantic Segmentation.	IEEE Trans Pattern Anal Mach Intell	2015
24092820	Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals.	Genome Res	2014
25538139	Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation.	Mol Syst Biol	2014
25267973	Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains.	J Immunol	2014
24296977	Type I interferon signaling genes in recurrent major depression: increased expression detected by whole-blood RNA sequencing.	Mol Psychiatry	2014
24337376	Effects of aging, cytomegalovirus infection, and EBV infection on human B cell repertoires.	J Immunol	2014
24092820	Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals.	Genome Res	2014
24981332	Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements.	Cell Host Microbe	2014
24786080	Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes.	Science	2014
24639495	High-resolution antibody dynamics of vaccine-induced immune responses.	Proc Natl Acad Sci U S A	2014
25538139	Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation.	Mol Syst Biol	2014
25267973	Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains.	J Immunol	2014
24981332	Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements.	Cell Host Microbe	2014
24786080	Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes.	Science	2014
24639495	High-resolution antibody dynamics of vaccine-induced immune responses.	Proc Natl Acad Sci U S A	2014
24337376	Effects of aging, cytomegalovirus infection, and EBV infection on human B cell repertoires.	J Immunol	2014
24296977	Type I interferon signaling genes in recurrent major depression: increased expression detected by whole-blood RNA sequencing.	Mol Psychiatry	2014
23591775	Apoptosis and other immune biomarkers predict influenza vaccine responsiveness.	Mol Syst Biol	2013
23768493	Convergent antibody signatures in human dengue.	Cell Host Microbe	2013
23874524	Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge.	PLoS One	2013
23644507	The transcriptional landscape of Î±Î² T cell differentiation.	Nat Immunol	2013
23591775	Apoptosis and other immune biomarkers predict influenza vaccine responsiveness.	Mol Syst Biol	2013
23624555	Identification of transcriptional regulators in the mouse immune system.	Nat Immunol	2013
23382184	Conservation and divergence in the transcriptional programs of the human and mouse immune systems.	Proc Natl Acad Sci U S A	2013
23874524	Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge.	PLoS One	2013
23624555	Identification of transcriptional regulators in the mouse immune system.	Nat Immunol	2013
23644507	The transcriptional landscape of Î±Î² T cell differentiation.	Nat Immunol	2013
23768493	Convergent antibody signatures in human dengue.	Cell Host Microbe	2013
23382184	Conservation and divergence in the transcriptional programs of the human and mouse immune systems.	Proc Natl Acad Sci U S A	2013
23064520	Imputing gene expression from selectively reduced probe sets.	Nat Methods	2012
23064520	Imputing gene expression from selectively reduced probe sets.	Nat Methods	2012
21385045	Genovo: de novo assembly for metagenomes.	J Comput Biol	2011
21385045	Genovo: de novo assembly for metagenomes.	J Comput Biol	2011
22072638	Systematic analysis of breast cancer morphology uncovers stromal features associated with survival.	Sci Transl Med	2011
22072638	Systematic analysis of breast cancer morphology uncovers stromal features associated with survival.	Sci Transl Med	2011
20035877	3D segmentation of cell boundaries from whole cell cryogenic electron tomography volumes.	J Struct Biol	2010
21347071	Combining Structured and Free-text Data for Automatic Coding of Patient Outcomes.	AMIA Annu Symp Proc	2010
20826840	Integration of early physiological responses predicts later illness severity in preterm infants.	Sci Transl Med	2010
20226027	Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action.	Genome Biol	2010
20531408	Automated identification of pathways from quantitative genetic interaction data.	Mol Syst Biol	2010
20035877	3D segmentation of cell boundaries from whole cell cryogenic electron tomography volumes.	J Struct Biol	2010
21347071	Combining Structured and Free-text Data for Automatic Coding of Patient Outcomes.	AMIA Annu Symp Proc	2010
20826840	Integration of early physiological responses predicts later illness severity in preterm infants.	Sci Transl Med	2010

1 - 50 of 96

Vera Pancaldi

Universite de Toulouse, Inserm, CNRS, Universite Toulouse III-Paul Sabatier

Career Start Year 2009

Number of shared co-authors 2

Oliver Stegle

Wellcome Sanger Institute

Career Start Year 2008

Number of shared co-authors 14

Theo A Knijnenburg

Allen Institute for Cell Science

Career Start Year 2006

Number of shared co-authors 3

Diogo F T Veiga

University of Campinas (UNICAMP)

Career Start Year 2006

Number of shared co-authors 0

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Haiyan Huang

Washington State University

Career Start Year 2004

Number of shared co-authors 6

Anshul Kundaje

Stanford University.

Career Start Year 2004

Number of shared co-authors 19

Stephen A Ramsey

Oregon State University

Career Start Year 2004

Number of shared co-authors 0

Tanusya M Murali

Yong Loo Lin School of Medicine, National University of Singapore

Career Start Year 2003

Number of shared co-authors 0

Gerald Quon

University of California davis

Career Start Year 2003

Number of shared co-authors 5

Quaid Morris

Sloan Kettering Institute

Career Start Year 2003

Number of shared co-authors 6

Zhaolei Zhang

University of Toronto

Career Start Year 2002

Number of shared co-authors 2

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 12

Ziv Bar-Joseph

Carnegie Mellon University

Career Start Year 2001

Number of shared co-authors 3

Chen-Hsiang Yeang

Institute of Statistical Science

Career Start Year 2001

Number of shared co-authors 1

Roded Sharan

Tel Aviv University

Career Start Year 2000

Number of shared co-authors 6

Erik van Nimwegen

University of Basel

Career Start Year 1998

Number of shared co-authors 0

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 1

Trey Ideker (CM4AI)

University of California San Diego

Career Start Year 1996

Number of shared co-authors 17

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 2

Brendan J Frey

University of Toronto

Career Start Year 1995

Number of shared co-authors 4

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 10

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 10

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 3

Tommi S Jaakkola

Massachusetts Institute of Technology

Career Start Year 1992

Number of shared co-authors 1

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 6

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 26

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 1

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 1

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 0

row(s) 1 - 30 of 30

Eran Segal

Weizmann Institute of Science

Co-authored papers 11

Aviv Regev

Broad Institute of MIT and Harvard

Co-authored papers 9

Alexis Battle

Johns Hopkins University School of Medicine

Co-authored papers 7

Sara Mostafavi

University of British Columbia and BC Children's Hospital

Co-authored papers 6

Nir Friedman

Co-authored papers 5

Vladimir Jojic

Calico Life Sciences LLC

Co-authored papers 4

Jonathan S Weissman

Whitehead Institute for Biomedical Research

Co-authored papers 4

Stephen B Montgomery

Stanford University

Co-authored papers 4

Haidong Wang

Stanford University

Co-authored papers 4

Tal Shay

Co-authored papers 3

Alexander E Urban

Co-authored papers 3

Suchi Saria

Johns Hopkins University

Co-authored papers 3

Scott D Boyd

Co-authored papers 3

Douglas F Levinson

Stanford University School of Medicine

Co-authored papers 3

Dana Pe'er

Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center

Co-authored papers 3

Gal Chechik

Gonda Multidisciplinary Brain Research Center, Bar-Ilan University

Co-authored papers 3

Su-In Lee

University of Washington

Co-authored papers 3

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 3

Mark M Davis

Co-authored papers 3

George M Church

Harvard Medical School

Co-authored papers 2

James B Potash

University Hospital Frankfurt

Co-authored papers 2

Kevan M Shokat

University of California San Francisco

Co-authored papers 2

Amy J Wagers

Joslin Diabetes Center

Co-authored papers 2

Aim??e M Dudley

Pacific Northwest Research Institute

Co-authored papers 2

Emma Pierson

Co-authored papers 2

Claudia V Jakubzick

Co-authored papers 2

Kenneth B Beckman

University of Minnesota Genomics Center (UMNGC)

Co-authored papers 2

Sean R Collins

University of California davis

Co-authored papers 2

Emmanouil T Dermitzakis

University of Geneva

Co-authored papers 2

Dorothea Fiedler

Leibniz Forschungsinstitut fur Molekulare Pharmakologie (FMP)

Co-authored papers 2

1 - 30

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