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Author Details

Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
2008
32
20
PMIDPaper TitleJournal TitlePublished Year
36853658Computational approach to evaluate scRNA-seq data quality and gene body coverage with SkewC.STAR Protoc2023
35146392SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data.iScience2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
33891873Automatic identification of small molecules that promote cell conversion and reprogramming.Stem Cell Reports2021
34521352The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.BMC Genom Data2021
34685871Genetic Mapping of the <i>HLA1</i> Locus Causing Hybrid Lethality in <i>Nicotiana</i> Interspecific Hybrids.Plants (Basel)2021
30407557Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.Nucleic Acids Res2019
31075273refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites.J Mol Biol2019
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
29045713SCPortalen: human and mouse single-cell centric database.Nucleic Acids Res2018
30538238Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.Sci Data2018
28873399Systematic analysis of transcription start sites in avian development.PLoS Biol2017
28241135An atlas of human long non-coding RNAs with accurate 5' ends.Nature2017
29182598Monitoring transcription initiation activities in rat and dog.Sci Data2017
28972578Linking FANTOM5 CAGE peaks to annotations with CAGEscan.Sci Data2017
28829439An integrated expression atlas of miRNAs and their promoters in human and mouse.Nat Biotechnol2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28850105FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies.Sci Data2017
25678556Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.Science2015
26635867Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line.Front Genet2015
24670764A promoter-level mammalian expression atlas.Nature2014
24982255MDGRAPE-4: a special-purpose computer system for molecular dynamics simulations.Philos Trans A Math Phys Eng Sci2014
25049417PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.Proc Natl Acad Sci U S A2014
24884663MOIRAI: a compact workflow system for CAGE analysis.BMC Bioinformatics2014
20890304Integration of cap analysis of gene expression and chromatin immunoprecipitation analysis on array reveals genome-wide androgen receptor signaling in prostate cancer cells.Oncogene2011
21211798Association of a polymorphism of BTN2A1 with myocardial infarction in East Asian populations.Atherosclerosis2011
20820187miR-148a is an androgen-responsive microRNA that promotes LNCaP prostate cell growth by repressing its target CAND1 expression.Prostate Cancer Prostatic Dis2010
19403135Identification of CELSR1 as a susceptibility gene for ischemic stroke in Japanese individuals by a genome-wide association study.Atherosclerosis2009
18350142Integrative genome-wide expression analysis bears evidence of estrogen receptor-independent transcription in heregulin-stimulated MCF-7 cells.PLoS One2008
18611171Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.Biotechniques2008
18479393Microchromosomal deletions involving SCN1A and adjacent genes in severe myoclonic epilepsy in infancy.Epilepsia2008
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Collaborators

Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 20
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 20
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 19
Imad Abugessaisa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 17
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 14
Marina Lizio
Cerevance Ltd
Co-authored papers 14
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 13
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 12
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 12
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 10
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 10
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 9
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 9
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Chung-Chau Hon
RIKEN center for Integrative Medical Sciences, Hiroshima University
Co-authored papers 8
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 8
Shuhei Noguchi
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 6
Mizuho Sakai
University of California berkeley
Co-authored papers 6
Yuri Ishizu
RIKEN Center for Life Science Technologies
Co-authored papers 6
Michihira Tagami
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Peter Heutink
German Center for Neurodegenerative Diseases (DZNE).
Co-authored papers 5
Atsushi Kondo
Tokyo University of Agriculture and Technology
Co-authored papers 5
Shintaro Katayama
Folkhalsan Research Center
Co-authored papers 5
Hiromi Nishiyori
Center for Integrative Medical Sciences
Co-authored papers 5
Christine A Wells
The University of Melbourne
Co-authored papers 5
Mitsuyoshi Murata
Center for Integrative Medical Sciences
Co-authored papers 5
Sachi Kato
RIKEN Center for Life Science Technologies
Co-authored papers 5
Nicolas Bertin
University Bordeaux, CNRS
Co-authored papers 5
Michael Detmar
Institute of Pharmaceutical Sciences, ETH Zurich
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