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Author Details

Pedro Belda-Ferre
University of California San Diego
2011
51
20
PMIDPaper TitleJournal TitlePublished Year
38052229Reverse metabolomics for the discovery of chemical structures from humans.Nature2024
36862087Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol.Environ Sci Technol2023
37853256Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2023
37350611Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution.mSystems2023
35042975Correction to: Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers.ISME J2022
35411350Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.medRxiv2022
35798960Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2022
35798029Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Nature2022
35703437Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings.mSystems2022
35703436Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings.mSystems2022
35575492SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with <i>Rothia</i> sp.mSystems2022
35369727Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.mSystems2022
33418911A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria.Mar Drugs2021
33653938High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County.mSystems2021
33594005Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load.mSystems2021
33512248A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.Biotechniques2021
33482920Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.Microbiome2021
34909793SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with <i>Rothia</i> sp.medRxiv2021
34726486Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs.mSystems2021
34508652Emergence of an early SARS-CoV-2 epidemic in the United States.Cell2021
34714054Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2.ACS Sens2021
34533933Chemical Proportionality within Molecular Networks.Anal Chem2021
34079079Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers.ISME J2021
33941606Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.Genome Res2021
34103074SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment.Microbiome2021
34312621Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence.bioRxiv2021
34193290Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome.Microbiome2021
32540955Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.Genome Res2020
32047061Human Skin, Oral, and Gut Microbiomes Predict Chronological Age.mSystems2020
32103176Global chemical effects of the microbiome include new bile-acid conjugations.Nature2020
33200135A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.bioRxiv2020
33106816A Sensitive, Rapid, and Portable CasRx-based Diagnostic Assay for SARS-CoV-2.medRxiv2020
33127739Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients.mSystems2020
33236030Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment.medRxiv2020
32793921SARS-CoV-2 Screening Among Symptom-Free Healthcare Workers.medRxiv2020
32839779Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity.bioRxiv2020
32839765Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.Res Sq2020
30643289Healthy infants harbor intestinal bacteria that protect against food allergy.Nat Med2019
31820171The Microbiome and Its Potential for Pharmacology.Handb Exp Pharmacol2019
31792218Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.Nat Commun2019
27173923What's LPS Got to Do with It? A Role for Gut LPS Variants in Driving Autoimmune and Allergic Disease.Cell Host Microbe2016
27845496Characterization of the microbiota associated to Pecten maximus gonads using 454-pyrosequencing.Int Microbiol2016
26272225The human oral metaproteome reveals potential biomarkers for caries disease.Proteomics2015
24006481Streptococcus dentisani sp. nov., a novel member of the mitis group.Int J Syst Evol Microbiol2014
24767457Microbiota diversity and gene expression dynamics in human oral biofilms.BMC Genomics2014
23469240Detection of transient bacteraemia following dental extractions by 16S rDNA pyrosequencing: a pilot study.PLoS One2013
24080530A tissue-dependent hypothesis of dental caries.Caries Res2013
21716308The oral metagenome in health and disease.ISME J2012
22647051Identifying a healthy oral microbiome through metagenomics.Clin Microbiol Infect2012
22253843Amplification by PCR artificially reduces the proportion of the rare biosphere in microbial communities.PLoS One2012
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Collaborators

Clarisse Marotz
University of California San Diego
Co-authored papers 17
Daniel McDonald
University of California San Diego
Co-authored papers 12
Gregory Humphrey
University of California
Co-authored papers 12
Rob Knight
University of California
Co-authored papers 12
Justin P Shaffer
University of California San Diego
Co-authored papers 11
Gene W Yeo
University of California
Co-authored papers 10
Austin D Swafford
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 9
Qiyun Zhu
Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University
Co-authored papers 9
Shashank Sathe
University of California, USA Institute for Genomic Medicine
Co-authored papers 9
Pieter C Dorrestein
Co-authored papers 8
Stefan Aigner
University of California San Diego
Co-authored papers 8
Yoshiki V??zquez-Baeza
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 8
Peter De Hoff
University of California San Diego
Co-authored papers 8
Rebecca Fielding-Miller
Herbert Wertheim School of Public Health, University of California
Co-authored papers 8
Rebecca Tsai
University of California San Diego
Co-authored papers 8
Gail Ackermann
University of California San Diego
Co-authored papers 7
Cameron Martino
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 7
Mingxun Wang
Co-authored papers 6
Emily Eisner
University of Manchester
Co-authored papers 6
Mehrbod Estaki
Cumming School of Medicine, University of Calgary
Co-authored papers 5
Alan K Jarmusch
Co-authored papers 4
Aaron F Carlin
Co-authored papers 4
Brigid S Boland
University of California
Co-authored papers 4
Smruthi Karthikeyan
California Institute of Technology
Co-authored papers 3
Joseph O Falkinham
Virginia Tech
Co-authored papers 3
Laura Nicholson
Scripps Clinic/Scripps Green Hospital
Co-authored papers 3
Nathaniel L Matteson
The Scripps Research Institute
Co-authored papers 3
Stephen Wandro
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 3
Karthik Gangavarapu
the Scripps Research Institute
Co-authored papers 3
Pavel A Pevzner
University of California
Co-authored papers 3
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