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Author Details

David C Schriemer
University of Calgary, 0 Hospital Drive NW
1996
107
37
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36880265Apparatus for Automated Continuous Hydrogen Deuterium Exchange Mass Spectrometry Measurements from Milliseconds to Hours.Anal Chem2023
37665033Novobiocin blocks nucleic acid binding to Polθ and inhibits stimulation of its ATPase activity.Nucleic Acids Res2023
37595185Mouse Model of Fragile X Syndrome Analyzed by Quantitative Proteomics: A Comparison of Methods.J Proteome Res2023
37590165All-in-One Pseudo-MS<sup>3</sup> Method for the Analysis of Gas-Phase Cleavable Protein Crosslinking Reactions.J Am Soc Mass Spectrom2023
37851921High-Efficiency Enrichment by Saturating Nanoliters of Protein Affinity Media.Anal Chem2023
37022750High-Sensitivity Proteome-Scale Searches for Crosslinked Peptides Using CRIMP 2.0.Anal Chem2023
36653429Author Correction: Addressing proteolytic efficiency in enzymatic degradation therapy for celiac disease.Sci Rep2023
3651164113<sup>th</sup> annual symposium of the Canadian National Proteomics Network.Expert Rev Proteomics2022
35612744A Crosslinking Mass Spectrometry Protocol for the Structural Analysis of Microtubule-Associated Proteins.Methods Mol Biol2022
35485925Doublecortin engages the microtubule lattice through a cooperative binding mode involving its C-terminal domain.Elife2022
33412091The active DNA-PK holoenzyme occupies a tensed state in a staggered synaptic complex.Structure2021
33592142Improving Spectral Validation Rates in Hydrogen-Deuterium Exchange Data Analysis.Anal Chem2021
34418567IMProv: A Resource for Cross-link-Driven Structure Modeling that Accommodates Protein Dynamics.Mol Cell Proteomics2021
32480078Harmonizing structural mass spectrometry analyses in the mass spec studio.J Proteomics2020
32031402Correlation between Labeling Yield and Surface Accessibility in Covalent Labeling Mass Spectrometry.J Am Soc Mass Spectrom2020
33277614The substrate specificity of the human TRAPPII complex's Rab-guanine nucleotide exchange factor activity.Commun Biol2020
33277478A substrate binding model for the KEOPS tRNA modifying complex.Nat Commun2020
33065067Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.Structure2020
30582701Photo-Cross-Linking Mass Spectrometry and Integrative Modeling Enables Rapid Screening of Antigen Interactions Involving Bacterial Transferrin Receptors.J Proteome Res2019
31780431Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.Structure2019
31442408Dipeptidase-1 Is an Adhesion Receptor for Neutrophil Recruitment in Lungs and Liver.Cell2019
31499019A microtubule crosslinking protocol for integrative structural modeling activities.Anal Biochem2019
31198032Quantitative Analysis of Protein Covalent Labeling Mass Spectrometry Data in the Mass Spec Studio.Anal Chem2019
31570166SSEThread: Integrative threading of the DNA-PKcs sequence based on data from chemical cross-linking and hydrogen deuterium exchange.Prog Biophys Mol Biol2019
31045356First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.Anal Chem2019
30651562The CHD6 chromatin remodeler is an oxidative DNA damage response factor.Nat Commun2019
29405698Simultaneous Proteoform Analysis of Histones H3 and H4 with a Simplified Middle-Down Proteomics Method.Anal Chem2018
29975514Lysine Propionylation To Boost Sequence Coverage and Enable a "Silent SILAC" Strategy for Relative Protein Quantification.Anal Chem2018
28062800Novel Allosteric Pathway of Eg5 Regulation Identified through Multivariate Statistical Analysis of Hydrogen-Exchange Mass Spectrometry (HX-MS) Ligand Screening Data.Mol Cell Proteomics2017
28257520Lactoferrin binding protein B - a bi-functional bacterial receptor protein.PLoS Pathog2017
28453785Structural and functional characterization of the PNKP-XRCC4-LigIV DNA repair complex.Nucleic Acids Res2017
28404794Neprosin, a Selective Prolyl Endoprotease for Bottom-up Proteomics and Histone Mapping.Mol Cell Proteomics2017
28154854Nanospray HX-MS configuration for structural interrogation of large protein systems.Analyst2017
28799075Amino Acid Insertion Frequencies Arising from Photoproducts Generated Using Aliphatic Diazirines.J Am Soc Mass Spectrom2017
27870998Supporting metabolomics with adaptable software: design architectures for the end-user.Curr Opin Biotechnol2017
27436081Carnivorous Nutrition in Pitcher Plants (Nepenthes spp.) via an Unusual Complement of Endogenous Enzymes.J Proteome Res2016
27481162Addressing proteolytic efficiency in enzymatic degradation therapy for celiac disease.Sci Rep2016
27412762High Sensitivity Crosslink Detection Coupled With Integrative Structure Modeling in the Mass Spec Studio.Mol Cell Proteomics2016
26009873HX-MS2 for high performance conformational analysis of complex protein states.Protein Sci2015
26411510A robust capillary liquid chromatography/tandem mass spectrometry method for quantitation of neuromodulatory endocannabinoids.Rapid Commun Mass Spectrom2015
26023280A hypothesis-directed approach to the targeted development of a multiplexed proteomic biomarker assay for cancer.Cancer Inform2015
25993527Recombinant Nepenthesin II for Hydrogen/Deuterium Exchange Mass Spectrometry.Anal Chem2015
24365662Expression and characterization of plant aspartic protease nepenthesin-1 from Nepenthes gracilis.Protein Expr Purif2014
25427063Toward standardizing deuterium content reporting in hydrogen exchange-MS.Anal Chem2014
25242457Mass spec studio for integrative structural biology.Structure2014
25066134Nucleotide exchange in dimeric MCAK induces longitudinal and lateral stress at microtubule ends to support depolymerization.Structure2014
24717559Tracking allosteric propagation with HX-MS.Structure2014
24661217Aspartic protease nepenthesin-1 as a tool for digestion in hydrogen/deuterium exchange mass spectrometry.Anal Chem2014
22372537Insight into the redox regulation of the phosphoglucan phosphatase SEX4 involved in starch degradation.FEBS J2013
24104569Morphine biosynthesis in opium poppy involves two cell types: sieve elements and laticifers.Plant Cell2013
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Collaborators

Daniel S Ziemianowicz
University of Calgary, Arnie Charbonneau Cancer Institute
Co-authored papers 9
Susan P Lees-Miller
University of Calgary, 0 Hospital Drive NW
Co-authored papers 8
Morgan Hepburn
University of Calgary
Co-authored papers 8
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 6
Atefeh Rafiei
University of Calgary
Co-authored papers 6
Linda Lee
Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary
Co-authored papers 6
Christoph U Schr??der
University of Calgary, Arnie Charbonneau Cancer Institute
Co-authored papers 5
Daniel J Saltzberg
University of California san francisco
Co-authored papers 4
Trevor F Moraes
University of Toronto, University Avenue
Co-authored papers 4
Shujuan Fang
Charbonneau Cancer Institute, University of Calgary
Co-authored papers 4
Alexander Leitner
ETH Zurich
Co-authored papers 3
Rosa Viner
University of California (Davis)
Co-authored papers 3
Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 3
Juri Rappsilber
Institute for Biotechnology, Technical University Berlin
Co-authored papers 3
John A Tainer
The University of Texas MD Anderson Cancer Center
Co-authored papers 3
Charles Calmettes
Institut National de la Recherche Scientifique (INRS), Universite du Quebec
Co-authored papers 3
Christoph H Borchers
McGill University
Co-authored papers 2
Lan Huang
University of California Irvine
Co-authored papers 2
Oliver F Bathe
Cumming School of Medicine, University of Calgary
Co-authored papers 2
Florian Stengel
University of Konstanz Universitatsstrasse 10
Co-authored papers 2
Michael R Hoopmann
Institute for Systems Biology
Co-authored papers 2
Richard A Scheltema
Utrecht Institute for Pharmaceutical Sciences, Utrecht University
Co-authored papers 2
Nir Kalisman
Institute of Life Sciences, The Hebrew University
Co-authored papers 2
Petr Nov??k
Institute of Microbiology of the CAS
Co-authored papers 2
Andrea Sinz
Center for Structural Mass Spectrometry, Martin Luther University Halle-Wittenberg
Co-authored papers 2
Robert L Moritz
Institute for Systems Biology
Co-authored papers 2
Carla Schmidt
Johannes Gutenberg University Mainz
Co-authored papers 2
Michael G??tze
and Pharmacy, Freie Universitat Berlin
Co-authored papers 2
Albert J R Heck
Utrecht University
Co-authored papers 2
Karl Mechtler
IMP-Institute of Molecular Pathology
Co-authored papers 2
Release 1.2