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Author Details

Olli Kallioniemi
Karolinska Institute
1984
413
110
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36083003Fibroblast subsets in non-small cell lung cancer: Associations with survival, mutations, and immune features.J Natl Cancer Inst2023
37671026Image-based and machine learning-guided multiplexed serology test for SARS-CoV-2.Cell Rep Methods2023
37907613The drug efficacy testing in 3D cultures platform identifies effective drugs for ovarian cancer patients.NPJ Precis Oncol2023
37178002Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data.Nucleic Acids Res2023
36964195Prediction model for drug response of acute myeloid leukemia patients.NPJ Precis Oncol2023
36476658Drug response profiles in patient-derived cancer cells across histological subtypes of ovarian cancer: real-time therapy tailoring for a patient with low-grade serous carcinoma.Br J Cancer2023
36878102Novel therapeutic approaches for pleural mesothelioma identified by functional ex vivo drug sensitivity testing.Lung Cancer2023
36464160Protocol for 3D drug sensitivity and resistance testing of patient-derived cancer cells in 384-well plates.SLAS Discov2023
36934951Comparison of two supporting matrices for patient-derived cancer cells in 3D drug sensitivity and resistance testing assay (3D-DSRT).SLAS Discov2023
36933996Ex Vivo Drug Testing in Patient-derived Papillary Renal Cancer Cells Reveals EGFR and the BCL2 Family as Therapeutic Targets.Eur Urol Focus2023
34837846High-throughput ex vivo drug testing identifies potential drugs and drug combinations for NRAS-positive malignant melanoma.Transl Oncol2022
35795056Prognostic Role of Tumor Immune Microenvironment in Pleural Epithelioid Mesothelioma.Front Oncol2022
35642679Correction to "Integration of Metabolomics and Expression of Glycerol-3-phosphate Acyltransferase (GPAM) in Breast Cancerâ¿¿Link to Patient Survival, Hormone Receptor Status, and Metabolic Profiling".J Proteome Res2022
35354797Integrative multi-omics and drug response profiling of childhood acute lymphoblastic leukemia cell lines.Nat Commun2022
36874403Stromal FAP Expression is Associated with MRI Visibility and Patient Survival in Prostate Cancer.Cancer Res Commun2022
36575299Drug sensitivity profiling of 3D tumor tissue cultures in the pediatric precision oncology program INFORM.NPJ Precis Oncol2022
35977930Multiomics characterization implicates PTK7 in ovarian cancer EMT and cell plasticity and offers strategies for therapeutic intervention.Cell Death Dis2022
34890102E-cadherin is a robust prognostic biomarker in colorectal cancer and low expression is associated with sensitivity to inhibitors of topoisomerase, aurora, and HSP90 in preclinical models.Mol Oncol2022
34856119Multiomics and digital monitoring during lifestyle changes reveal independent dimensions of human biology and health.Cell Syst2022
34789538Implementing a Functional Precision Medicine Tumor Board for Acute Myeloid Leukemia.Cancer Discov2022
33382404Genetic Risk Score for Serum 25-Hydroxyvitamin D Concentration Helps to Guide Personalized Vitamin D Supplementation in Healthy Finnish Adults.J Nutr2021
33625756The transcriptome-wide landscape of molecular subtype-specific mRNA expression profiles in acute myeloid leukemia.Am J Hematol2021
33530027STRN-ALK rearranged pediatric malignant peritoneal mesothelioma - Functional testing of 527 cancer drugs in patient-derived cancer cells.Transl Oncol2021
34876631FLT3-ITD allelic ratio and HLF expression predict FLT3 inhibitor efficacy in adult AML.Sci Rep2021
34515408The Porto European Cancer Research Summit 2021.Mol Oncol2021
34302041Bayesian multi-source regression and monocyte-associated gene expression predict BCL-2 inhibitor resistance in acute myeloid leukemia.NPJ Precis Oncol2021
33955203High tumor cell platelet-derived growth factor receptor beta expression is associated with shorter survival in malignant pleural epithelioid mesothelioma.J Pathol Clin Res2021
31439679Multi-parametric single cell evaluation defines distinct drug responses in healthy hematologic cells that are retained in corresponding malignant cell types.Haematologica2020
31968078Immune profiles in acute myeloid leukemia bone marrow associate with patient age, T-cell receptor clonality, and survival.Blood Adv2020
32678289KIT pathway upregulation predicts dasatinib efficacy in acute myeloid leukemia.Leukemia2020
32591764Publisher Correction: Building an international consortium for tracking coronavirus health status.Nat Med2020
32989221Glucocorticoids induce differentiation and chemoresistance in ovarian cancer by promoting ROR1-mediated stemness.Cell Death Dis2020
32119072Breeze: an integrated quality control and data analysis application for high-throughput drug screening.Bioinformatics2020
30635636Immune cell constitution in bone marrow microenvironment predicts outcome in adult ALL.Leukemia2019
30237271T-cell inflamed tumor microenvironment predicts favorable prognosis in primary testicular lymphoma.Haematologica2019
30125350Clonal heterogeneity influences drug responsiveness in renal cancer assessed by ex vivo drug testing of multiple patient-derived cancer cells.Int J Cancer2019
31269283Fibroblast as a critical stromal cell type determining prognosis in prostate cancer.Prostate2019
31175323Elevated expression of S100A8 and S100A9 correlates with resistance to the BCL-2 inhibitor venetoclax in AML.Leukemia2019
30835561Individual and stable autoantibody repertoires in healthy individuals.Autoimmunity2019
30745580Drug sensitivity testing on patient-derived sarcoma cells predicts patient response to treatment and identifies c-Sarc inhibitors as active drugs for translocation sarcomas.Br J Cancer2019
30358171Combined epithelial marker analysis of tumour budding in stage II colorectal cancer.J Pathol Clin Res2019
30530703Anagrelide for Gastrointestinal Stromal Tumor.Clin Cancer Res2019
30468409Characterization of farnesyl diphosphate farnesyl transferase 1 (FDFT1) expression in cancer.Per Med2019
28804127Discovery of novel drug sensitivities in T-PLL by high-throughput ex vivo drug testing and mutation profiling.Leukemia2018
30026337PD-L1<sup>+</sup> tumor-associated macrophages and PD-1<sup>+</sup> tumor-infiltrating lymphocytes predict survival in primary testicular lymphoma.Haematologica2018
29970484Drug-Sensitivity Screening and Genomic Characterization of 45 HPV-Negative Head and Neck Carcinoma Cell Lines for Novel Biomarkers of Drug Efficacy.Mol Cancer Ther2018
29900672Prognostic, predictive, and pharmacogenomic assessments of CDX2 refine stratification of colorectal cancer.Mol Oncol2018
30143015Association of tamoxifen resistance and lipid reprogramming in breast cancer.BMC Cancer2018
29925907Immune cell contexture in the bone marrow tumor microenvironment impacts therapy response in CML.Leukemia2018
29616861Case studies investigating genetic heterogeneity between anatomically distinct bone marrow compartments in acute myeloid leukemia.Leuk Lymphoma2018
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Collaborators

Prostate Cancer Research Center, Tampere University and Tays Cancer Center
Co-authored papers 32
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Co-authored papers 31
Institute of Pathology, University Medical Center Hamburg-Eppendorf
Co-authored papers 29
Central Finland Hospital Nova
Co-authored papers 28
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Co-authored papers 27
Institute of Biomedicine, University of Turku
Co-authored papers 26
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Co-authored papers 23
University of Helsinki
Co-authored papers 15
Oregon Health and Science University
Co-authored papers 15
University Hospital Zurich
Co-authored papers 12
National Cancer Institute, National Institutes of Health
Co-authored papers 10
National Human Genome Research Institute
Co-authored papers 8
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 8
Zhujiang Hospital, Southern Medical University
Co-authored papers 8
Co-authored papers 8
Co-authored papers 8
Helsinki Institute for Information Technology (HIIT), Aalto University
Co-authored papers 7
University of Turku and Abo Akademi University
Co-authored papers 7
Institute for Cancer Research, Oslo University Hospital
Co-authored papers 7
National Cancer Institute
Co-authored papers 6
Wihuri Research Institute
Co-authored papers 5
The Brady Urological Institute, The Johns Hopkins School of Medicine
Co-authored papers 5
Center for Cancer Research, National Cancer Institute
Co-authored papers 5
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Aalto University
Co-authored papers 5
University of British Columbia
Co-authored papers 5
The Norwegian Radium Hospital, Oslo University Hospital
Co-authored papers 4
Karolinska Institute
Co-authored papers 4
Folkhalsan Research Center, University of Helsinki
Co-authored papers 4
University of Helsinki
Co-authored papers 4