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Author Details

Yanxin Liu
University of California san francisco
2007
27
18
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34031651CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes.Res Sq2021
34013269CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes.bioRxiv2021
32913054General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM.Proc Natl Acad Sci U S A2020
31987035The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis.BMC Biol2020
33060197Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.Science2020
33154106An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.Science2020
30061717Designed peptides that assemble into cross-α amyloid-like structures.Nat Chem Biol2018
28742020Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1.Elife2017
27339980Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase.Science2016
25988868Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations.J Am Chem Soc2015
24437525Observation of complete pressure-jump protein refolding in molecular dynamics simulation and experiment.J Am Chem Soc2014
25255882Stable small quantum dots for synaptic receptor tracking on live neurons.Angew Chem Int Ed Engl2014
24550255Single molecule FRET reveals pore size and opening mechanism of a mechano-sensitive ion channel.Elife2014
24675427Molecular insights into the membrane-associated phosphatidylinositol 4-kinase IIα.Nat Commun2014
23300284Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1.Proc Natl Acad Sci U S A2013
23620522Misplaced helix slows down ultrafast pressure-jump protein folding.Proc Natl Acad Sci U S A2013
23709365Flexible interwoven termini determine the thermal stability of thermosomes.Protein Cell2013
23341770Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography.PLoS Pathog2013
22737279Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations.J Phys Chem Lett2012
21689530Extension of a three-helix bundle domain of myosin VI and key role of calmodulins.Biophys J2011
20038147Stabilization of native and non-native structures by salt bridges in a lattice model of the GCN4 leucine dimer.J Phys Chem B2010
21297873Challenges in protein folding simulations: Timescale, representation, and analysis.Nat Phys2010
21070943Formation of salt bridges mediates internal dimerization of myosin VI medial tail domain.Structure2010
20713002Flow-induced beta-hairpin folding of the glycoprotein Ibalpha beta-switch.Biophys J2010
18248013Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper.J Chem Phys2008
19045375The trigger sequence in the GCN4 leucine zipper: alpha-helical propensity and multistate dynamics of folding and dimerization.J Chem Phys2008
17718634Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide.J Chem Phys2007
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Collaborators

David A Agard
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 7
Huong T Kratochvil
Department of Pharmaceutical Chemistry, University of California-San Francisco
Co-authored papers 5
Aashish Manglik
Department of Pharmaceutical Chemistry, University of California San Francisco
Co-authored papers 4
Zanlin Yu
University of California at San Francisco
Co-authored papers 4
Kaitlin Schaefer
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 4
Alexandrea N Rizo
University of California san francisco
Co-authored papers 4
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 4
Sergei Pourmal
University of California san francisco
Co-authored papers 4
Kliment A Verba
University of California, University of California San Francisco
Co-authored papers 4
Kaihua Zhang
Henan Normal University
Co-authored papers 4
Un Seng Chio
University of California san francisco
Co-authored papers 4
Raphael Trenker
Cardiovascular Research Institute, University of California San Francisco
Co-authored papers 4
Yifan Cheng
Quantitative Bioscience Institute, University of California san francisco
Co-authored papers 4
Meghna Gupta
University of California san francisco
Co-authored papers 4
Amber M Smith
University of California san francisco
Co-authored papers 4
Axel F Brilot
University of California san francisco
Co-authored papers 4
Caleigh M Azumaya
Fred Hutchinson Cancer Center
Co-authored papers 4
Christian B Billesb??lle
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 4
Cristina Puchades
University of California San Francisco (UCSF) School of Medicine
Co-authored papers 4
Henry C Nguyen
Shanghai Clinical Research and Trial Center
Co-authored papers 4
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 4
Gregory E Merz
University of California san francisco
Co-authored papers 4
Lily Y-L Lee
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 3
Tsz Kin Martin Tsui
University of California san francisco
Co-authored papers 3
Feng Wang
University of California san francisco
Co-authored papers 3
Jianhua Zhao
University of California san francisco
Co-authored papers 3
Fengbo Zhou
Washington University School of Medicine
Co-authored papers 3
Tristan W Owens
University of California san francisco
Co-authored papers 3
Nadia Herrera
University of California san francisco
Co-authored papers 3
Eric Tse
School of Clinical Medicine, University of Hong Kong
Co-authored papers 3
Release 1.2