Author details

Full Name

Surendra S Negi

Affiliation

Institute for Human Infections and Immunity, The University of Texas Medical Branch

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37781674	The updated Structural Database of Allergenic Proteins (SDAP 2.0) provides 3D models for allergens and incorporated bioinformatics tools.	J Allergy Clin Immunol Glob	2023
37905971	Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.	Proteins	2023
37706599	Alanine Scanning of the Unstructured Region of Ara h 2 and of a Related Mimotope Reveals Critical Amino Acids for IgE Binding.	Mol Nutr Food Res	2023
37781674	The updated Structural Database of Allergenic Proteins (SDAP 2.0) provides 3D models for allergens and incorporated bioinformatics tools.	J Allergy Clin Immunol Glob	2023
37905971	Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.	Proteins	2023
37706599	Alanine Scanning of the Unstructured Region of Ara h 2 and of a Related Mimotope Reveals Critical Amino Acids for IgE Binding.	Mol Nutr Food Res	2023
35064154	Regional and temporal coordinated mutation patterns in SARS-CoV-2 spike protein revealed by a clustering and network analysis.	Sci Rep	2022
35386653	Still SDAPing Along: 20 Years of the Structural Database of Allergenic Proteins.	Front Allergy	2022
35878658	PCP consensus protein/peptide alphavirus antigens stimulate broad spectrum neutralizing antibodies.	Peptides	2022
35064154	Regional and temporal coordinated mutation patterns in SARS-CoV-2 spike protein revealed by a clustering and network analysis.	Sci Rep	2022
35386653	Still SDAPing Along: 20 Years of the Structural Database of Allergenic Proteins.	Front Allergy	2022
35878658	PCP consensus protein/peptide alphavirus antigens stimulate broad spectrum neutralizing antibodies.	Peptides	2022
33217410	The importance of the 2S albumins for allergenicity and cross-reactivity of peanuts, tree nuts, and sesame seeds.	J Allergy Clin Immunol	2021
34087220	Synthetic proteins for COVID-19 diagnostics.	Peptides	2021
33217410	The importance of the 2S albumins for allergenicity and cross-reactivity of peanuts, tree nuts, and sesame seeds.	J Allergy Clin Immunol	2021
34411692	Design of peptides with high affinity binding to a monoclonal antibody as a basis for immunotherapy.	Peptides	2021
34411692	Design of peptides with high affinity binding to a monoclonal antibody as a basis for immunotherapy.	Peptides	2021
34087220	Synthetic proteins for COVID-19 diagnostics.	Peptides	2021
32800880	Producing physicochemical property consensus alphavirus protein antigens for broad spectrum vaccine design.	Antiviral Res	2020
32800880	Producing physicochemical property consensus alphavirus protein antigens for broad spectrum vaccine design.	Antiviral Res	2020
30518655	Antibody-Mediated Protective Mechanisms Induced by a Trivalent Parainfluenza Virus-Vectored Ebolavirus Vaccine.	J Virol	2019
30518655	Antibody-Mediated Protective Mechanisms Induced by a Trivalent Parainfluenza Virus-Vectored Ebolavirus Vaccine.	J Virol	2019
31437325	IgE binding to linear epitopes of Ara h 2 in peanut allergic preschool children undergoing oral Immunotherapy.	Pediatr Allergy Immunol	2019
31437325	IgE binding to linear epitopes of Ara h 2 in peanut allergic preschool children undergoing oral Immunotherapy.	Pediatr Allergy Immunol	2019
29627609	Distinguishing allergens from non-allergenic homologues using Physical-Chemical Property (PCP) motifs.	Mol Immunol	2018
29627609	Distinguishing allergens from non-allergenic homologues using Physical-Chemical Property (PCP) motifs.	Mol Immunol	2018
28062447	Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity.	Bioinformatics	2017
29066768	Functional classification of protein toxins as a basis for bioinformatic screening.	Sci Rep	2017
28062447	Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity.	Bioinformatics	2017
29066768	Functional classification of protein toxins as a basis for bioinformatic screening.	Sci Rep	2017
27238146	Conformational IgE epitopes of peanut allergens Ara h 2 and Ara h 6.	Clin Exp Allergy	2016
27238146	Conformational IgE epitopes of peanut allergens Ara h 2 and Ara h 6.	Clin Exp Allergy	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
27739488	A Conserved Structural Signature of the Homeobox Coding DNA in HOX genes.	Sci Rep	2016
27739488	A Conserved Structural Signature of the Homeobox Coding DNA in HOX genes.	Sci Rep	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
24899192	Western equine encephalitis virus: evolutionary analysis of a declining alphavirus based on complete genome sequences.	J Virol	2014
24899192	Western equine encephalitis virus: evolutionary analysis of a declining alphavirus based on complete genome sequences.	J Virol	2014
22123204	Validation of a phage display and computational algorithm by mapping a conformational epitope of Bla g 2.	Int Arch Allergy Immunol	2012
22274941	Engineering proteins with enhanced mechanical stability by force-specific sequence motifs.	Proteins	2012
23007387	Membrane fusion triggering: three modules with different structure and function in the upper half of the measles virus attachment protein stalk.	J Biol Chem	2012
22859308	Base of the measles virus fusion trimer head receives the signal that triggers membrane fusion.	J Biol Chem	2012
22123204	Validation of a phage display and computational algorithm by mapping a conformational epitope of Bla g 2.	Int Arch Allergy Immunol	2012
23007387	Membrane fusion triggering: three modules with different structure and function in the upper half of the measles virus attachment protein stalk.	J Biol Chem	2012
22859308	Base of the measles virus fusion trimer head receives the signal that triggers membrane fusion.	J Biol Chem	2012
22274941	Engineering proteins with enhanced mechanical stability by force-specific sequence motifs.	Proteins	2012
19121639	Structural analysis of linear and conformational epitopes of allergens.	Regul Toxicol Pharmacol	2009
19121639	Structural analysis of linear and conformational epitopes of allergens.	Regul Toxicol Pharmacol	2009
20140073	Automated detection of conformational epitopes using phage display Peptide sequences.	Bioinform Biol Insights	2009
20140073	Automated detection of conformational epitopes using phage display Peptide sequences.	Bioinform Biol Insights	2009

1 - 50 of 72

Neeladri Sen

Institute of Structural and Molecular Biology, University College London

Career Start Year 2017

Number of shared co-authors 3

Rosalba Lepore

Basel University Hospital and University of Basel

Career Start Year 2011

Number of shared co-authors 4

Jaume Bonet

Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne

Career Start Year 2006

Number of shared co-authors 8

Maksymilian Chruszcz

University of South Carolina, Michigan State University

Career Start Year 2000

Number of shared co-authors 1

Daron M Standley

Osaka university

Career Start Year 1998

Number of shared co-authors 40

David F Burke

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1997

Number of shared co-authors 2

Shira Albeck

Weizmann Institute of Science

Career Start Year 1996

Number of shared co-authors 2

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Career Start Year 1996

Number of shared co-authors 2

Orly Dym

Weizmann Institute of Science

Career Start Year 1995

Number of shared co-authors 2

Lukasz Jaroszewski

University of California Riverside School of Medicine

Career Start Year 1995

Number of shared co-authors 0

Baldo Oliva

Universitat Pompeu Fabra

Career Start Year 1991

Number of shared co-authors 4

Robert B Russell

Heidelberg University

Career Start Year 1991

Number of shared co-authors 4

Haim J Wolfson

Tel Aviv University

Career Start Year 1991

Number of shared co-authors 36

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 22

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 1

Ramanathan Sowdhamini

Indian Institute of Science

Career Start Year 1989

Number of shared co-authors 1

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 23

Steven C Almo

Albert Einstein College of Medicine

Career Start Year 1988

Number of shared co-authors 3

David Baker

University of Washington

Career Start Year 1988

Number of shared co-authors 44

Adam Godzik

University of California Riverside

Career Start Year 1987

Number of shared co-authors 3

Mark S Johnson

Abo Akademi University

Career Start Year 1985

Number of shared co-authors 1

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 3

Michael J E Sternberg

Imperial College London

Career Start Year 1976

Number of shared co-authors 11

David S Moss

Institute of Structural and Molecular Biology, University of London

Career Start Year 1976

Number of shared co-authors 1

Ian A Wilson

The Scripps Research Institute, USA The Skaggs Institute for Chemical Biology

Career Start Year 1975

Number of shared co-authors 6

Tom L Blundell

Heartand Lung Research Institute, University of Cambridge

Career Start Year 1971

Number of shared co-authors 4

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 10

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 5

David Eisenberg

university of california los angeles

Career Start Year 1963

Number of shared co-authors 1

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 9

row(s) 1 - 30 of 30

Eiichiro Ichiishi

International University of Health and Welfare (IUHV Hospital)

Co-authored papers 2

Romina Oliva

University of Naples "Parthenope"

Co-authored papers 2

Tsukasa Nakamura

Purdue University

Co-authored papers 2

Luigi Cavallo

King Abdullah University of Science and Technology (KAUST)

Co-authored papers 2

Dina Schneidman-Duhovny

The Hebrew University of Jerusalem

Co-authored papers 2

Dima Kozakov

Stony Brook University

Co-authored papers 2

Jianlin Cheng

University of Missouri

Co-authored papers 2

Xianjin Xu

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 2

Sandor Vajda

Boston University

Co-authored papers 2

Juan Fern??ndez-Recio

Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)

Co-authored papers 2

Alexandre M J J Bonvin

Bijvoet Center for Biomolecular Research, Utrecht University

Co-authored papers 2

Marc F Lensink

University Lille, CNRS

Co-authored papers 2

Sameer Velankar

European Bioinformatics Institute

Co-authored papers 2

Carlos A Del Carpio

Choju-Medical Institute, Fukushimuta Hospital

Co-authored papers 2

Xiaoqin Zou

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 2

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 2

Dmitri Beglov

Boston University

Co-authored papers 2

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Co-authored papers 2

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 1

Zhiwei Ma

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 1

Liming Qiu

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 1

Shan Chang

Co-authored papers 1

Artem B Mamonov

MGH/Harvard Medical School

Co-authored papers 1

Iain H Moal

GSK Medicines Research Centre

Co-authored papers 1

Rebecca C Wade

Center for Molecular Biology (ZMBH), Heidelberg University

Co-authored papers 1

Jooyoung Lee

Korea Institute for Advanced Study

Co-authored papers 1

Bernard Maigret

Universite de Lorraine, CNRS

Co-authored papers 1

Gydo C P van Zundert

Utrecht University

Co-authored papers 1

Li C Xue

Utrecht University

Co-authored papers 1

Ilya A Vakser

The University of Kansas

Co-authored papers 1

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