Author details

Full Name

Angie S Hinrichs

Affiliation

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37232476	Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations.		2023
36420891	The UCSC Genome Browser database: 2023 update.	Nucleic Acids Res	2023
37185044	A lung-specific mutational signature enables inference of viral and bacterial respiratory niche.	Microb Genom	2023
34718705	The UCSC Genome Browser database: 2022 update.	Nucleic Acids Res	2022
35952714	Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape.	Nature	2022
34927180	Pandemic-scale phylogenetics.		2021
33972780	Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic.	Nat Genet	2021
33851162	A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control.	bioRxiv	2021
33821270	A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees.	bioRxiv	2021
33221922	The UCSC Genome Browser database: 2021 update.	Nucleic Acids Res	2021
33024970	Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic.	bioRxiv	2020
31691824	UCSC Genome Browser enters 20th year.	Nucleic Acids Res	2020
30407534	The UCSC Genome Browser database: 2019 update.	Nucleic Acids Res	2019
29106570	The UCSC Genome Browser database: 2018 update.	Nucleic Acids Res	2018
27899642	The UCSC Genome Browser database: 2017 update.	Nucleic Acids Res	2017
26590259	The UCSC Genome Browser database: 2016 update.	Nucleic Acids Res	2016
26740527	UCSC Data Integrator and Variant Annotation Integrator.	Bioinformatics	2016
25348212	Navigating protected genomics data with UCSC Genome Browser in a Box.	Bioinformatics	2015
25428374	The UCSC Genome Browser database: 2015 update.	Nucleic Acids Res	2015
24270787	The UCSC Genome Browser database: 2014 update.	Nucleic Acids Res	2014
25685613	The UCSC Ebola Genome Portal.	PLoS Curr	2014
23155063	The UCSC Genome Browser database: extensions and updates 2013.	Nucleic Acids Res	2013
22075998	ENCODE whole-genome data in the UCSC Genome Browser: update 2012.	Nucleic Acids Res	2012
23020263	G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes.	BMC Bioinformatics	2012
23255150	The UCSC Genome Browser.	Current Protocols in Bioinformatics	2012
22086951	The UCSC Genome Browser database: extensions and updates 2011.	Nucleic Acids Res	2012
21975940	The UCSC Genome Browser.	Current Protocols in Human Genetics	2011
21037257	ENCODE whole-genome data in the UCSC genome browser (2011 update).	Nucleic Acids Res	2011
20959295	The UCSC Genome Browser database: update 2011.	Nucleic Acids Res	2011
20639541	BigWig and BigBed: enabling browsing of large distributed datasets.	Bioinformatics	2010
21177976	Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.	Science	2010
19920125	ENCODE whole-genome data in the UCSC Genome Browser.	Nucleic Acids Res	2010
19906737	The UCSC Genome Browser database: update 2010.	Nucleic Acids Res	2010
18996895	The UCSC Genome Browser Database: update 2009.	Nucleic Acids Res	2009
19393040	The bovine lactation genome: insights into the evolution of mammalian milk.	Genome Biol	2009
19957273	The UCSC Genome Browser.	Current Protocols in Bioinformatics	2009
18086701	The UCSC Genome Browser Database: 2008 update.	Nucleic Acids Res	2008
18428780	The UCSC Genome Browser.	Current Protocols in Bioinformatics	2007
17567995	Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.	Genome Res	2007
17994087	Evolution of genes and genomes on the Drosophila phylogeny.	Nature	2007
17994088	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.	Nature	2007
17993665	Comparative genomic analysis using the UCSC genome browser.	Methods Mol Biol	2007
17166863	The ENCODE Project at UC Santa Cruz.	Nucleic Acids Res	2007
17142222	The UCSC genome browser database: update 2007.	Nucleic Acids Res	2007
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
16381938	The UCSC Genome Browser Database: update 2006.	Nucleic Acids Res	2006
16024819	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.	Genome Res	2005
14681465	The UCSC Table Browser data retrieval tool.	Nucleic Acids Res	2004
15057822	Genome sequence of the Brown Norway rat yields insights into mammalian evolution.	Nature	2004
14500911	Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.	Proc Natl Acad Sci U S A	2003