Author details

Full Name

Jean Monlong

Affiliation

ORCID

Career Start Year

2011

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37165083	Pangenome graph construction from genome alignments with Minigraph-Cactus.	Nat Biotechnol	2024
36865218	Phased nanopore assembly with Shasta and modular graph phasing with GFAse.	bioRxiv	2023
37710018	Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation.	Nat Methods	2023
35347328	Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing.	Nat Biotechnol	2022
35416251	Glioblastoma scRNA-seq shows treatment-induced, immune-dependent increase in mesenchymal cancer cells and structural variants in distal neural stem cells.	Neuro Oncol	2022
35020984	Ultrarapid Nanopore Genome Sequencing in a Critical Care Setting.	N Engl J Med	2022
35133172	Ultra-Rapid Nanopore Whole Genome Genetic Diagnosis of Dilated Cardiomyopathy in an Adolescent With Cardiogenic Shock.	Circ Genom Precis Med	2022
34590283	Inferring Copy Number from Triple-Negative Breast Cancer Patient Derived Xenograft scRNAseq Data Using scCNA.	Methods Mol Biol	2021
33433612	Invasive growth associated with cold-inducible RNA-binding protein expression drives recurrence of surgically resected brain metastases.	Neuro Oncol	2021
34914532	Pangenomics enables genotyping of known structural variants in 5202 diverse genomes.	Science	2021
32686750	Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.	Nat Biotechnol	2020
32051000	Genotyping structural variants in pangenome graphs using the vg toolkit.	Genome Biol	2020
32816949	A Preclinical Trial and Molecularly Annotated Patient Cohort Identify Predictive Biomarkers in Homologous Recombination-deficient Pancreatic Cancer.	Clin Cancer Res	2020
31768071	Stalled developmental programs at the root of pediatric brain tumors.	Nat Genet	2019
31649251	Genome-wide microhomologies enable precise template-free editing of biologically relevant deletion mutations.	Nat Commun	2019
29649218	Global characterization of copy number variants in epilepsy patients from whole genome sequencing.	PLoS Genet	2018
30137632	Human copy number variants are enriched in regions of low mappability.	Nucleic Acids Res	2018
29100083	High Rate of Recurrent De Novo Mutations in Developmental and Epileptic Encephalopathies.	Am J Hum Genet	2017
28332632	Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma.	Sci Rep	2017
25954002	Human genomics. The human transcriptome across tissues and individuals.	Science	2015
25582907	Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.	Nat Commun	2015
25140736	Identification of genetic variants associated with alternative splicing using sQTLseekeR.	Nat Commun	2014
24265505	Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia.	Genome Res	2014
24037378	Transcriptome and genome sequencing uncovers functional variation in humans.	Nature	2013
22113564	Overdiagnosis from non-progressive cancer detected by screening mammography: stochastic simulation study with calibration to population based registry data.	BMJ, The	2011