Author details

Full Name

Manuel Garber

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36346618	An Early Islet Transcriptional Signature Is Associated With Local Inflammation in Autoimmune Diabetes.		2023
35314823	Spatial transcriptomic reconstruction of the mouse olfactory glomerular map suggests principles of odor processing.	Nat Neurosci	2022
35675353	Single cell transcriptomics reveals dysregulated cellular and molecular networks in a fragile X syndrome model.	PLoS Genetics	2022
35920332	Intratracheally administered LNA gapmer antisense oligonucleotides induce robust gene silencing in mouse lung fibroblasts.	Nucleic Acids Res	2022
34637755	Simultaneous profiling of multiple chromatin proteins in the same cells.	Molecular Cell	2021
33752810	Gaining Insight into Vitiligo Genetics through the Lens of a Large Epidemiologic Study.		2021
34516831	scRNA-seq of human vitiligo reveals complex networks of subclinical immune activation and a role for CCR5 in T function.	Science Translational Medicine	2021
34452995	Hierarchy of signaling thresholds downstream of the T cell receptor and the Tec kinase ITK.	Proceedings of the National Academy of Sciences of the United States of America	2021
32729827	An atlas of cell types in the mouse epididymis and vas deferens.	Elife	2020
31914605	Recovery of viable endocrine-specific cells and transcriptomes from human pancreatic islet-engrafted mice.	FASEB J	2020
32066947	HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.	Nat Immunol	2020
32306927	DolphinNext: a distributed data processing platform for high throughput genomics.	BMC Genomics	2020
32991830	High-Resolution Mapping of Multiway Enhancer-Promoter Interactions Regulating Pathogen Detection.	Molecular Cell	2020
30833470	HLA Class II Antigen Processing and Presentation Pathway Components Demonstrated by Transcriptome and Protein Analyses of Islet Î²-Cells From Donors With Type 1 Diabetes.		2019
30611200	DEBrowser: interactive differential expression analysis and visualization tool for count data.	BMC Genomics	2019
31471524	Frequent Loss of IRF2 in Cancers Leads to Immune Evasion through Decreased MHC Class I Antigen Presentation and Increased PD-L1 Expression.	J Immunol	2019
31420514	Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells.	Proceedings of the National Academy of Sciences of the United States of America	2019
29454939	Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon.	Cell Syst	2018
29887377	Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.	Cell	2018
29093087	Early Epstein-Barr Virus Genomic Diversity and Convergence toward the B95.8 Genome in Primary Infection.	J Virol	2018
29198561	Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation.	Mol Cell	2017
28506212	GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.	BMC Genomics	2017
28335028	Defining the 5Î¿ and 3Î¿ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq.	Nucleic Acids Res	2017
27814506	Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic.	Cell	2016
26838501	Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs.	Genome Biol	2016
26721685	Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.	Science	2016
27470110	End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data.	Genome Research	2016
27733645	High Epstein-Barr Virus Load and Genomic Diversity Are Associated with Generation of gp350-Specific Neutralizing Antibodies following Acute Infectious Mononucleosis.	J Virol	2016
26702833	Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome.	Dev Cell	2015
25931473	Novel Observations From Next-Generation RNA Sequencing of Highly Purified Human Adult and Fetal Islet Cell Subsets.		2015
25775043	Functional annotation of native enhancers with a Cas9-histone demethylase fusion.	Nature Methods	2015
25730492	Simultaneous generation of many RNA-seq libraries in a single reaction.	Nat Methods	2015
26480473	DNA-binding-domain fusions enhance the targeting range and precision of Cas9.	Nature Methods	2015
25043817	The PPARÎ±-FGF21 hormone axis contributes to metabolic regulation by the hepatic JNK signaling pathway.	Cell Metab	2014
25453760	A negative feedback loop of transcription factors specifies alternative dendritic cell chromatin States.	Mol Cell	2014
24346702	Cas9 effector-mediated regulation of transcription and differentiation in human pluripotent stem cells.	Development (Cambridge)	2014
24429365	Epstein-Barr virus latent membrane protein 1 genetic variability in peripheral blood B cells and oropharyngeal fluids.	J Virol	2014
24429298	Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals.	Genome Res	2014
24850788	HIV type 1 (HIV-1) proviral reservoirs decay continuously under sustained virologic control in HIV-1-infected children who received early treatment.	J Infect Dis	2014
23706738	Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis.	Cell	2013
24157732	Semiconductor-based DNA sequencing of histone modification states.	Nat Commun	2013
24367289	Genome-wide assessment of post-transcriptional control in the fly brain.	Frontiers in Molecular Neuroscience	2013
22110045	Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.	Genome Res	2012
22940246	A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals.	Mol Cell	2012
22078882	Systematic discovery of TLR signaling components delineates viral-sensing circuits.	Cell	2011
21516085	Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells.	Nat Biotechnol	2011
21623353	Computational methods for transcriptome annotation and quantification using RNA-seq.	Nature Methods	2011
21993624	A high-resolution map of human evolutionary constraint using 29 mammals.	Nature	2011
21874018	lincRNAs act in the circuitry controlling pluripotency and differentiation.	Nature	2011
20436462	Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.	Nat Biotechnol	2010