Author details

Full Name

Pankaj Jaiswal

Affiliation

Oregon State University

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36941263	Meta-analysis of the space flight and microgravity response of the Arabidopsis plant transcriptome.	NPJ Microgravity	2023
37761813	Loss of a Premature Stop Codon in the Rice Wall-Associated Kinase 91 (<i>WAK91</i>) Gene Is a Candidate for Improving Leaf Sheath Blight Disease Resistance.	Genes (Basel)	2023
37384147	Using knowledge graphs to infer gene expression in plants.	Front Artif Intell	2023
37299125	Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).	Plants (Basel)	2023
36866529	The Gene Ontology knowledgebase in 2023.	Genetics	2023
36866529	The Gene Ontology knowledgebase in 2023.	Genetics	2023
34791415	Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.	Nucleic Acids Res	2022
35670753	Drought induces epitranscriptome and proteome changes in stem-differentiating xylem of Populus trichocarpa.	Plant Physiol	2022
35037202	Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.	Methods Mol Biol	2022
33476427	A cost-effective maize ear phenotyping platform enables rapid categorization and quantification of kernels.	Plant J	2021
33622857	Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.	mSystems	2021
33777532	Beyond gene ontology (GO): using biocuration approach to improve the gene nomenclature and functional annotation of rice S-domain kinase subfamily.	PeerJ	2021
33605092	A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome.	Plant Genome	2021
34122478	PSDX: A Comprehensive Multi-Omics Association Database of <i>Populus trichocarpa</i> With a Focus on the Secondary Growth in Response to Stresses.	Front Plant Sci	2021
33947809	Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".	mSystems	2021
34354718	Chia (<i>Salvia hispanica</i>) Gene Expression Atlas Elucidates Dynamic Spatio-Temporal Changes Associated With Plant Growth and Development.	Front Plant Sci	2021
33170273	Gramene 2021: harnessing the power of comparative genomics and pathways for plant research.	Nucleic Acids Res	2021
33205138	The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems.	Patterns (N Y)	2020
32050897	Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis.	BMC Genomics	2020
31680153	Plant Reactome: a knowledgebase and resource for comparative pathway analysis.	Nucleic Acids Res	2020
30649295	Involving community in genes and pathway curation.	Database (Oxford)	2019
31749666	Quantitative analysis of <i>Mycobacterium avium</i> subsp<i>. hominissuis</i> proteome in response to antibiotics and during exposure to different environmental conditions.	Clin Proteomics	2019
31214208	The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.	Front Plant Sci	2019
29186578	The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.	Nucleic Acids Res	2018
30239679	AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.	Database (Oxford)	2018
29483921	Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching.	Front Plant Sci	2018
29165655	Expression Atlas: gene and protein expression across multiple studies and organisms.	Nucleic Acids Res	2018
29165610	Gramene 2018: unifying comparative genomics and pathway resources for plant research.	Nucleic Acids Res	2018
27799469	Plant Reactome: a resource for plant pathways and comparative analysis.	Nucleic Acids Res	2017
27987178	Variant Effect Prediction Analysis Using Resources Available at Gramene Database.	Methods Mol Biol	2017
27987175	Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study.	Methods Mol Biol	2017
26973684	FragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca.	Front Plant Sci	2016
28713666	Gramene Database: Navigating Plant Comparative Genomics Resources.	Curr Plant Biol	2016
26481351	Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.	Nucleic Acids Res	2016
26553803	Gramene 2016: comparative plant genomics and pathway resources.	Nucleic Acids Res	2016
26519404	Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.	Methods Mol Biol	2016
26519402	The Plant Ontology: A Tool for Plant Genomics.	Methods Mol Biol	2016
26519401	Plant Pathway Databases.	Methods Mol Biol	2016
26801645	Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.	G3 (Bethesda)	2016
25353719	The floral transcriptome of Eucalyptus grandis.	New Phytol	2015
26713234	Emerging semantics to link phenotype and environment.	PeerJ	2015
26208213	Quantitative Trait Loci Associated with the Tocochromanol (Vitamin E) Pathway in Barley.	PLoS One	2015
25680774	Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis.	Mol Plant	2015
25774204	An ontology approach to comparative phenomics in plants.	Plant Methods	2015
25562316	Finding our way through phenotypes.	PLoS Biol	2015
24217918	Gramene 2013: comparative plant genomics resources.	Nucleic Acids Res	2014
25538713	VitisCyc: a metabolic pathway knowledgebase for grapevine (Vitis vinifera).	Front Plant Sci	2014
25584184	AISO: Annotation of Image Segments with Ontologies.	J Biomed Semantics	2014
25393533	Comparative analysis of predicted plastid-targeted proteomes of sequenced higher plant genomes.	PLoS One	2014
25366180	Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis.	Mol Plant	2014

1 - 50 of 80

Alex Warwick Vesztrocy

University of Lausanne

Career Start Year 2017

Number of shared co-authors 6

Saranga Wijeratne

The Ohio State University

Career Start Year 2012

Number of shared co-authors 0

Bahram Samanfar

Agriculture and Agri-Food Canada

Career Start Year 2011

Number of shared co-authors 0

Artem S Kasianov

Institute for Information Transmission Problems of the Russian Academy of Sciences

Career Start Year 2011

Number of shared co-authors 4

Zi Shi

Maize Research Institute, Beijing Academy of Agriculture and Forestry Sciences

Career Start Year 2010

Number of shared co-authors 2

Gaurav D Moghe

Cornell University

Career Start Year 2010

Number of shared co-authors 11

Linda V Bakker

Wageningen University and Research

Career Start Year 2010

Number of shared co-authors 0

Liangsheng Zhang

College of Agriculture and Biotechnology, Zhejiang University

Career Start Year 2009

Number of shared co-authors 4

Fei He

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Career Start Year 2007

Number of shared co-authors 11

Steven Maere

Ghent University

Career Start Year 2005

Number of shared co-authors 2

Haibao Tang

Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University

Career Start Year 2005

Number of shared co-authors 15

Vasanth R Singan

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Career Start Year 2005

Number of shared co-authors 4

Marie-Laure Martin-Magniette

Universite Paris-Saclay, CNRS, University of Evry

Career Start Year 2004

Number of shared co-authors 0

Miroslaw Kwasniewski

Medical University of Bialystok

Career Start Year 2004

Number of shared co-authors 0

Fran??oise Thibaud-Nissen

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 2003

Number of shared co-authors 16

Anthony C Bryan

Oak Ridge National Laboratory

Career Start Year 2001

Number of shared co-authors 1

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Career Start Year 2000

Number of shared co-authors 10

Chengming Fan

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Career Start Year 1999

Number of shared co-authors 0

Rachael P Huntley

Institute of Cardiovascular Science, University College London

Career Start Year 1998

Number of shared co-authors 87

Thomas Girke

Institute for Integrative Genome Biology, University of California Riverside

Career Start Year 1998

Number of shared co-authors 2

Dirk Walther

Max Planck Institute of Molecular Plant Physiology

Career Start Year 1995

Number of shared co-authors 1

Dennis Shasha

Courant Institute of Mathematical Sciences, New York University

Career Start Year 1994

Number of shared co-authors 8

Kevin L Childs

Center for Genomics-Enabled Plant Science, Michigan State University

Career Start Year 1991

Number of shared co-authors 10

Massimo Delledonne

University of Verona

Career Start Year 1990

Number of shared co-authors 1

Martin Kuiper

Norwegian University of Science and Technology

Career Start Year 1983

Number of shared co-authors 23

Mark J Guiltinan

The Pennsylvania State University, University Park

Career Start Year 1982

Number of shared co-authors 4

Brian J Haas

Broad Institute of MIT and Harvard

Career Start Year 1981

Number of shared co-authors 11

Cathie Martin

John Innes Centre

Career Start Year 1981

Number of shared co-authors 1

Susan M Bridges

Mississippi State University

Career Start Year 1980

Number of shared co-authors 77

Joseph R Ecker

The Salk Institute for Biological Studies

Career Start Year 1973

Number of shared co-authors 11

row(s) 1 - 30 of 30

Doreen Ware

USDA ARS NAA Robert W. Holley Center for Agriculture and Health

Co-authored papers 23

Justin Elser

Oregon State University

Co-authored papers 22

Sushma Naithani

Oregon State University

Co-authored papers 22

Justin Preece

Oregon State University

Co-authored papers 19

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Co-authored papers 17

Laurel Cooper

Oregon State University

Co-authored papers 13

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 12

Marcela K Tello-Ruiz

State University of New York at Old Westbury

Co-authored papers 9

Peter D'Eustachio

NYU Grossman School of Medicine

Co-authored papers 9

Ramona L Walls

Critical Path Institute

Co-authored papers 7

Paul Kersey

European Bioinformatics Institute