Author details

Full Name

Kiyoko F Aoki-Kinoshita

Affiliation

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37067908	LMNglyPred: prediction of human N-linked glycosylation sites using embeddings from a pre-trained protein language model.	Glycobiology	2023
37673902	Development of an integrated and inferenceable RDF database of glycan, pathogen and disease resources.	Sci Data	2023
38053926	Predicting the pathogenicity of missense variants based on protein instability to support diagnosis of patients with novel variants of ARSL.		2023
36711080	Worldwide Glycoscience Informatics Infrastructure: The GlySpace Alliance.		2023
37129482	Bridging glycoinformatics and cheminformatics: integration efforts between GlyCosmos and PubChem.	Glycobiology	2023
34379754	Corrigendum to: The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application.	Glycobiology	2022
36103332	Meeting report on the international symposium on microbial Glycoconjugates and the GlySpace alliance: from micro- to macroglycoscience (MiGGA symposium).	Glycobiology	2022
35452093	GALAXY ver3: updated web application for glycosylation profiling based on 3D HPLC map.	Glycobiology	2022
35696078	Functions of Glycosylation and Related Web Resources for Its Prediction.	Methods in Molecular Biology	2022
35352122	CarbArrayART: a new software tool for carbohydrate microarray data storage, processing, presentation, and reporting.	Glycobiology	2022
35335136	Computational Modeling of -Linked Glycan Biosynthesis in CHO Cells.	Molecules	2022
35030433	Development of a novel monosaccharide substitution matrix for improved comparison of glycan structures.	Carbohydrate Research	2022
34809564	RDFizing the biosynthetic pathway of E.coli O-antigen to enable semantic sharing of microbiology data.	BMC Microbiology	2021
33677548	The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application.	Glycobiology	2021
33730547	Global mapping of glycosylation pathways in human-derived cells.	Developmental Cell	2021
33657805	LM-GlycomeAtlas Ver. 2.0: An Integrated Visualization for Lectin Microarray-based Mouse Tissue Glycome Mapping Data with Lectin Histochemistry.	Journal of Proteome Research	2021
33657417	Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank.	Structure	2021
33125071	The international glycan repository GlyTouCan version 3.0.	Nucleic Acids Research	2021
33174597	GlycoPOST realizes FAIR principles for glycomics mass spectrometry data.	Nucleic Acids Res	2021
34858527	GlycoBioinformatics.	Beilstein Journal of Organic Chemistry	2021
34663219	Functional glyco-metagenomics elucidates the role of glycan-related genes in environments.	BMC Bioinformatics	2021
34885895	DeepNGlyPred: A Deep Neural Network-Based Approach for Human N-Linked Glycosylation Site Prediction.	Molecules	2021
34885724	SugarDrawer: A Web-Based Database Search Tool with Editing Glycan Structures.	Molecules	2021
32572234	The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences.	Nature Methods	2020
32324859	GlyGen data model and processing workflow.	Bioinformatics	2020
31573039	The GlySpace Alliance: toward a collaborative global glycoinformatics community.	Glycobiology	2020
31616925	GlyGen: Computational and Informatics Resources for Glycoscience.	Glycobiology	2020
31332201	Towards a standardized bioinformatics infrastructure for N- and O-glycomics.	Nature Communications	2019
30535258	GlycanFormatConverter: a conversion tool for translating the complexities of glycans.		2019
31443278	LM-GlycomeAtlas Ver. 1.0: A Novel Visualization Tool for Lectin Microarray-Based Glycomic Profiles of Mouse Tissue Sections.	Molecules	2019
29859376	MCAW-DB: A glycan profile database capturing the ambiguity of glycan recognition patterns.	Carbohydrate Research	2018
30030808	Analyzing Glycan-Binding Profiles Using Weighted Multiple Alignment of Trees.	Methods in Molecular Biology	2018
30405127	Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns.	Nature Communications	2018
28093404	Development and application of an algorithm to compute weighted multiple glycan alignments.		2017
28525772	Implementation of GlycanBuilder to draw a wide variety of ambiguous glycans.	Carbohydrate Research	2017
28922742	GlyTouCan: an accessible glycan structure repository.	Glycobiology	2017
28263066	WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures.	Journal of Chemical Information and Modeling	2017
27993942	The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.	Glycobiology	2017
27654115	The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.	Glycobiology	2016
27288496	The Glycome Analytics Platform: an integrative framework for glycobioinformatics.		2016
27318307	Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database.	Carbohydrate Research	2016
27454116	A systematic framework to derive N-glycan biosynthesis process and the automated construction of glycosylation networks.	BMC Bioinformatics	2016
26476458	GlyTouCan 1.0--The international glycan structure repository.	Nucleic Acids Research	2016
26543186	Symbol Nomenclature for Graphical Representations of Glycans.	Glycobiology	2015
25753712	Analyzing glycan-binding patterns with the ProfilePSTMM Tool.	Methods in Molecular Biology	2015
25753708	Analyzing glycan structure synthesis with the Glycan Pathway Predictor (GPP) Tool.	Methods in Molecular Biology	2015
25753705	Glycomic analysis using KEGG GLYCAN.	Methods in Molecular Biology	2015
25580689	The Lectin Frontier Database (LfDB), and data generation based on frontal affinity chromatography.	Molecules	2015
25388145	GlycoRDF: an ontology to standardize glycomics data in RDF.		2015
25940448	Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing.	Genes to Cells	2015