Author details

Full Name

Barbara E Engelhardt

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36587187	Nonnegative spatial factorization applied to spatial genomics.		2023
37592182	Alignment of spatial genomics data using deep Gaussian processes.		2023
36778332	Optimizing the design of spatial genomic studies.		2023
36482321	A Poisson reduced-rank regression model for association mapping in sequencing data.		2022
35713413	Towards 'end-to-end' analysis and understanding of biological timecourse data.	Biochemical Journal	2022
35629084	Guiding Efficient, Effective, and Patient-Oriented Electrolyte Replacement in Critical Care: An Artificial Intelligence Reinforcement Learning Approach.	J Pers Med	2022
35977827	Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues.	Life Science Alliance	2022
34362843	A self-exciting point process to study multicellular spatial signaling patterns.	Proceedings of the National Academy of Sciences of the United States of America	2021
33707455	Joint analysis of expression levels and histological images identifies genes associated with tissue morphology.	Nature Communications	2021
33513136	Causal network inference from gene transcriptional time-series response to glucocorticoids.	PLoS Computational Biology	2021
33608535	Optimal marker gene selection for cell type discrimination in single cell analyses.	Nature Communications	2021
34740792	Brain kernel: A new spatial covariance function for fMRI data.	Neuroimage	2021
33391794	ACE inhibition and cardiometabolic risk factors, lung ACE2 and TMPRSS2 gene expression, and plasma ACE2 levels: a Mendelian randomization study.	R Soc Open Sci	2020
32229555	Measuring the predictability of life outcomes with a scientific mass collaboration.	Proc Natl Acad Sci U S A	2020
31992614	netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis.	Genome Res	2020
32641134	Sparse multi-output Gaussian processes for online medical time series prediction.	BMC Medical Informatics and Decision Making	2020
32693778	A robust nonlinear low-dimensional manifold for single cell RNA-seq data.	BMC Bioinformatics	2020
32913072	The impact of sex on gene expression across human tissues.	Science	2020
30864333	An Optimal Policy for Patient Laboratory Tests in Intensive Care Units.	Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing	2019
29982387	Statistical tests for detecting variance effects in quantitative trait studies.		2019
29337990	Clustering gene expression time series data using an infinite Gaussian process mixture model.	PLoS Computational Biology	2018
35875263	Fast Moment Estimation for Generalized Latent Dirichlet Models.	Journal of the American Statistical Association	2018
30097539	Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding.	Genome Res	2018
30523250	GPCR-specific autoantibody signatures are associated with physiological and pathological immune homeostasis.	Nature Communications	2018
29703885	Bayesian nonparametric discovery of isoforms and individual specific quantification.	Nature Communications	2018
27864351	Detecting differential growth of microbial populations with Gaussian process regression.	Genome Research	2017
29022597	Genetic effects on gene expression across human tissues.	Nature	2017
29021288	Co-expression networks reveal the tissue-specific regulation of transcription and splicing.	Genome Res	2017
29430037	Expandable factor analysis.	Biometrika	2017
28230848	Computational approaches to fMRI analysis.	Nature Neuroscience	2017
26362575	Meta-analysis of Genome-Wide Association Studies for Extraversion: Findings from the Genetics of Personality Consortium.	Behav Genet	2016
27467526	Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering.	PLoS Computational Biology	2016
26071445	Posterior predictive checks to quantify lack-of-fit in admixture models of latent population structure.	Proceedings of the National Academy of Sciences of the United States of America	2015
25616342	Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements.	Genome Biol	2015
25993607	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	JAMA Psychiatry	2015
26418766	Diving deeper to predict noncoding sequence function.	Nature Methods	2015
24711425	Genetic variation associated with euphorigenic effects of d-amphetamine is associated with diminished risk for schizophrenia and attention deficit hyperactivity disorder.	Proc Natl Acad Sci U S A	2014
25230670	Mangravite et al. reply.	Nature	2014
23671031	Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: recurrence of tyrosine aminotransferase activity in the IÎ± subfamily.	Proteins	2013
23995691	A statin-dependent QTL for GATM expression is associated with statin-induced myopathy.	Nature	2013
23812975	Stability selection for regression-based models of transcription factor-DNA binding specificity.		2013
23935528	Integrative modeling of eQTLs and cis-regulatory elements suggests mechanisms underlying cell type specificity of eQTLs.	PLoS Genet	2013
22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	PLoS One	2012
21784873	Genome-scale phylogenetic function annotation of large and diverse protein families.	Genome Res	2011
20220758	Understanding mechanisms underlying human gene expression variation with RNA sequencing.	Nature	2010
20862358	Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis.	PLoS Genet	2010
20664722	Phylogenetic molecular function annotation.	J Phys Conf Ser	2009
16217548	Protein molecular function prediction by Bayesian phylogenomics.	PLoS Comput Biol	2005