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Author Details

David R Goodlett
University of Victoria
1988
296
73
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38048423Proteomic Evolution from Acute to Post-COVID-19 Conditions.J Proteome Res2024
37461651Structural Elucidation of Intact Rough-Type Lipopolysaccharides using Field Asymmetric Ion Mobility Spectrometry and Kendrick Mass Defect Plots.bioRxiv2023
37623706Investigating A Multi-Domain Polyketide Synthase in <i>Amphidinium carterae</i>.Mar Drugs2023
37619527Strategies for uncovering stable isotope tracing patterns between cell populations.Curr Opin Biotechnol2023
37943784Structural Elucidation of Intact Rough-type Lipopolysaccharides Using Field Asymmetric Ion Mobility Spectrometry and Kendrick Mass Defect Plots.Anal Chem2023
37880309Deep proteome coverage advances knowledge of Treponema pallidum protein expression profiles during infection.Sci Rep2023
37184080Structure Determination of Lipid A with Multiple Glycosylation Sites by Tandem MS of Lithium-Adducted Negative Ions.J Am Soc Mass Spectrom2023
37303810Lipid A structural diversity among members of the genus <i>Leptospira</i>.Front Microbiol2023
37093777Sample Preparation Methods for Targeted Single-Cell Proteomics.J Proteome Res2023
36961404The Immunopeptidome from a Genomic Perspective: Establishing the Noncanonical Landscape of MHC Class I-Associated Peptides.Cancer Immunol Res2023
34793171Correction to "Toll-like Receptor 4-Independent Effects of Lipopolysaccharide Identified Using Longitudinal Serum Proteomics".J Proteome Res2022
35649364Caulobacter lipid A is conditionally dispensable in the absence of fur and in the presence of anionic sphingolipids.Cell Rep2022
35576511Lipid A Structural Determination from a Single Colony.Anal Chem2022
35397901DIA-MS proteome analysis of formalin-fixed paraffin-embedded glioblastoma tissues.Anal Chim Acta2022
36550114Benchmarking tools for detecting longitudinal differential expression in proteomics data allows establishing a robust reproducibility optimization regression approach.Nat Commun2022
36326685A Sensitive GC-MS Method for Quantitation of Lipid A Backbone Components and Terminal Phosphate Modifications.J Am Soc Mass Spectrom2022
36255333A Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Direct-from-Urine-Specimen Diagnostic for Gram-Negative Pathogens.Microbiol Spectr2022
35164409Evaluation of Fast and Sensitive Proteome Profiling of FF and FFPE Kidney Patient Tissues.Molecules2022
34997654MS visualization and interpretation software (MS-VIS), a tool for visualizing mass spectra and analysing mass lists.Rapid Commun Mass Spectrom2022
35143212Longitudinal Plasma Proteomics Analysis Reveals Novel Candidate Biomarkers in Acute COVID-19.J Proteome Res2022
35172604Intestinal Deletion of 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase Promotes Expansion of the Resident Stem Cell Compartment.Arterioscler Thromb Vasc Biol2022
35107363A Novel Lipid-Based MALDI-TOF Assay for the Rapid Detection of Colistin-Resistant <i>Enterobacter</i> Species.Microbiol Spectr2022
35104878Cytoplasmic switch of ARS2 isoforms promotes nonsense-mediated mRNA decay and arsenic sensitivity.Nucleic Acids Res2022
33359883Proteomic profile of vitreous in patients with tubercular uveitis.Tuberculosis (Edinb)2021
33683131An Update on MRMAssayDB: A Comprehensive Resource for Targeted Proteomics Assays in the Community.J Proteome Res2021
33491460MicroPOTS Analysis of Barrett's Esophageal Cell Line Models Identifies Proteomic Changes after Physiologic and Radiation Stress.J Proteome Res2021
33712473Deep-sea microbes as tools to refine the rules of innate immune pattern recognition.Sci Immunol2021
33806612Interfaces with Structure Dynamics of the Workhorses from Cells Revealed through Cross-Linking Mass Spectrometry (CLMS).Biomolecules2021
34215064Comparison of different digestion methods for proteomic analysis of isolated cells and FFPE tissue samples.Talanta2021
34342534Species-Specific Endotoxin Stimulus Determines Toll-Like Receptor 4- and Caspase 11-Mediated Pathway Activation Characteristics.mSystems2021
34138549Transcriptomics Analysis Uncovers Transient Ceftazidime Tolerance in <i>Burkholderia</i> Biofilms.ACS Infect Dis2021
32374172Sensitive Top-Down Proteomics Analysis of a Low Number of Mammalian Cells Using a Nanodroplet Sample Processing Platform.Anal Chem2020
32037835Toll-like Receptor 4-Independent Effects of Lipopolysaccharide Identified Using Longitudinal Serum Proteomics.J Proteome Res2020
33299017Rapid microbial identification and colistin resistance detection via MALDI-TOF MS using a novel on-target extraction of membrane lipids.Sci Rep2020
32902263On-Tissue Derivatization of Lipopolysaccharide for Detection of Lipid A Using MALDI-MSI.Anal Chem2020
32924474Streamlined Analysis of Cardiolipins in Prokaryotic and Eukaryotic Samples Using a Norharmane Matrix by MALDI-MSI.J Am Soc Mass Spectrom2020
32866596The effects of p53 gene inactivation on mutant proteome expression in a human melanoma cell model.Biochim Biophys Acta Gen Subj2020
32812765Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry.J Am Soc Mass Spectrom2020
32384576MGMS2: Membrane glycolipid mass spectrum simulator for polymicrobial samples.Rapid Commun Mass Spectrom2020
30567747A Prospective Study of <i>Acinetobacter baumannii</i> Complex Isolates and Colistin Susceptibility Monitoring by Mass Spectrometry of Microbial Membrane Glycolipids.J Clin Microbiol2019
31695691The Role of TLRs in Anti-cancer Immunity and Tumor Rejection.Front Immunol2019
31352010Analysis of venom sac constituents from the solitary, aculeate wasp Cerceris rybyensis.Toxicon2019
31369253Model-Based Spectral Library Approach for Bacterial Identification via Membrane Glycolipids.Anal Chem2019
31390493Proteome analysis of tissues by mass spectrometry.Mass Spectrom Rev2019
30857388Multi-Omics Strategies Uncover Host-Pathogen Interactions.ACS Infect Dis2019
30759239Temporal proteomic profiling reveals changes that support Burkholderia biofilms.Pathog Dis2019
30598313The effect of embryonic origin on the osteoinductive potential of bone allografts.J Prosthet Dent2019
30571097Rapid Microbial Identification and Antibiotic Resistance Detection by Mass Spectrometric Analysis of Membrane Lipids.Anal Chem2019
29120501Analysis of the plasma proteome using iTRAQ and TMT-based Isobaric labeling.Mass Spectrom Rev2018
29907817Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis.Sci Rep2018
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Collaborators

Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 47
Scott A Shaffer
Co-authored papers 41
Jimmy K Eng
University of Washington
Co-authored papers 19
Leroy Hood
Center for Phenomic Health, The Buck Institute for Research on Aging
Co-authored papers 10
Samuel O Purvine
Pacific Northwest National Laboratory
Co-authored papers 8
Garry L Corthals
Co-authored papers 8
Thomas J Montine
Stanford University
Co-authored papers 7
John D Aitchison
Center for Global Infectious Disease Research, Seattle Children's Research Institute
Co-authored papers 7
Richard D Smith
Pacific Northwest National Laboratory
Co-authored papers 6
Alexey I Nesvizhskii
University of Michigan ann arbor
Co-authored papers 6
Sina A Gharib
Co-authored papers 6
Paul Shannon
Institute for Systems Biology
Co-authored papers 4
Yassene Mohammed
Center for Proteomics and Metabolomics, Leiden University Medical Center
Co-authored papers 4
Marcello Marelli
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Co-authored papers 3
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Co-authored papers 3
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Co-authored papers 3
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Co-authored papers 3
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Pacific Northwest National Laboratory
Co-authored papers 3
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International Centre for Cancer Vaccine Science, University of Gdansk
Co-authored papers 3
Mowei Zhou
Co-authored papers 3
Michael J MacCoss
University of Washington
Co-authored papers 3
Tapan K Maity
Co-authored papers 2
Nitin S Baliga
Institute for Systems Biology
Co-authored papers 2
Vesteinn Thorsson
Institute for Systems Biology
Co-authored papers 2
Valerie C Wasinger
Co-authored papers 2
Gordon A Anderson
Co-authored papers 2
James E Bruce
Co-authored papers 2
Jeffrey A Ranish
Institute for Systems Biology
Co-authored papers 2
David J Dilworth
Institute for Systems Biology
Co-authored papers 2
James B Leverenz
Lou Ruvo Center for Brain Health, Cleveland Clinic
Co-authored papers 2
Release 1.2