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Author Details

Mark D Wilkinson
Universidad Politecnica de Madrid (UPM)
1993
67
21
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36978149Testing the stress gradient hypothesis in soil bacterial communities associated with vegetation belts in the Andean Atacama Desert.Environ Microbiome2023
36978149Testing the stress gradient hypothesis in soil bacterial communities associated with vegetation belts in the Andean Atacama Desert.Environ Microbiome2023
35292119Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data.J Biomed Semantics2022
35812959The Indole-3-Acetamide-Induced <i>Arabidopsis</i> Transcription Factor MYB74 Decreases Plant Growth and Contributes to the Control of Osmotic Stress Responses.Front Plant Sci2022
36517834Towards FAIRification of sensitive and fragmented rare disease patient data: challenges and solutions in European reference network registries.Orphanet J Rare Dis2022
35292119Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data.J Biomed Semantics2022
35812959The Indole-3-Acetamide-Induced <i>Arabidopsis</i> Transcription Factor MYB74 Decreases Plant Growth and Contributes to the Control of Osmotic Stress Responses.Front Plant Sci2022
36517834Towards FAIRification of sensitive and fragmented rare disease patient data: challenges and solutions in European reference network registries.Orphanet J Rare Dis2022
33289510Predicting microbiomes through a deep latent space.Bioinformatics2021
33289510Predicting microbiomes through a deep latent space.Bioinformatics2021
33068437Endogenous indole-3-acetamide levels contribute to the crosstalk between auxin and abscisic acid, and trigger plant stress responses in Arabidopsis.J Exp Bot2021
33068437Endogenous indole-3-acetamide levels contribute to the crosstalk between auxin and abscisic acid, and trigger plant stress responses in Arabidopsis.J Exp Bot2021
32341891Data-driven classification of the certainty of scholarly assertions.PeerJ2020
32308977BioHackathon 2015: Semantics of data for life sciences and reproducible research.F1000Res2020
32341891Data-driven classification of the certainty of scholarly assertions.PeerJ2020
32308977BioHackathon 2015: Semantics of data for life sciences and reproducible research.F1000Res2020
30941274Robust and automatic definition of microbiome states.PeerJ2019
31800038Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa.Gigascience2019
31636272Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework.Sci Data2019
30169888Virulence- and signaling-associated genes display a preference for long 3'UTRs during rice infection and metabolic stress in the rice blast fungus.New Phytol2019
31541130Evaluating FAIR maturity through a scalable, automated, community-governed framework.Sci Data2019
30890711Addendum: The FAIR Guiding Principles for scientific data management and stewardship.Sci Data2019
30941274Robust and automatic definition of microbiome states.PeerJ2019
31636272Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework.Sci Data2019
31800038Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa.Gigascience2019
30169888Virulence- and signaling-associated genes display a preference for long 3'UTRs during rice infection and metabolic stress in the rice blast fungus.New Phytol2019
31541130Evaluating FAIR maturity through a scalable, automated, community-governed framework.Sci Data2019
30890711Addendum: The FAIR Guiding Principles for scientific data management and stewardship.Sci Data2019
29704307MECP2 variation in Rett syndrome-An overview of current coverage of genetic and phenotype data within existing databases.Hum Mutat2018
30480660Genome-wide polyadenylation site mapping datasets in the rice blast fungus Magnaporthe oryzae.Sci Data2018
30423107MDPbiome: microbiome engineering through prescriptive perturbations.Bioinformatics2018
29944145A design framework and exemplar metrics for FAIRness.Sci Data2018
29704307MECP2 variation in Rett syndrome-An overview of current coverage of genetic and phenotype data within existing databases.Hum Mutat2018
29944145A design framework and exemplar metrics for FAIRness.Sci Data2018
30423107MDPbiome: microbiome engineering through prescriptive perturbations.Bioinformatics2018
30480660Genome-wide polyadenylation site mapping datasets in the rice blast fungus Magnaporthe oryzae.Sci Data2018
27858291Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae.Arch Virol2017
29214571Preparing Data at the Source to Foster Interoperability across Rare Disease Resources.Adv Exp Med Biol2017
27858291Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae.Arch Virol2017
29214571Preparing Data at the Source to Foster Interoperability across Rare Disease Resources.Adv Exp Med Biol2017
26978244The FAIR Guiding Principles for scientific data management and stewardship.Sci Data2016
26978244The FAIR Guiding Principles for scientific data management and stewardship.Sci Data2016
27433158Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base.Front Plant Sci2016
27433158Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base.Front Plant Sci2016
25577362Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples.Anal Bioanal Chem2015
25577362Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples.Anal Bioanal Chem2015
25896417VPS13D Gene Variant Is Associated with Altered IL-6 Production and Mortality in Septic Shock.J Innate Immun2015
26640691Enhanced reproducibility of SADI web service workflows with Galaxy and Docker.Gigascience2015
26640691Enhanced reproducibility of SADI web service workflows with Galaxy and Docker.Gigascience2015
25896417VPS13D Gene Variant Is Associated with Altered IL-6 Production and Mortality in Septic Shock.J Innate Immun2015
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Collaborators

Institute of Data Science, Maastricht University
Co-authored papers 11
Lawrence Berkeley National Laboratory
Co-authored papers 7
DKFZ - German Cancer Research Center
Co-authored papers 6
Leiden University Medical Center
Co-authored papers 6
Leiden Institute for FAIR and Equitable Science
Co-authored papers 6
Oxford e-Research Centre, University of Oxford
Co-authored papers 6
Database Center for Life Science, Joint Support-Center for Data Science Research
Co-authored papers 5
Naturalis Biodiversity Center
Co-authored papers 5
National Institute for Molecular Genetics "Romeo ed Enrica Invernizzi"
Co-authored papers 5
University of Basque Country (UPV/EHU)
Co-authored papers 5
Centro de Tecnologia Biomedica. Universidad Politecnica de Madrid
Co-authored papers 5
Database Center for Life Science, Joint Support-Center for Data Science Research
Co-authored papers 5
University of Oxford
Co-authored papers 5
Database Center for Life Science
Co-authored papers 5
Tohoku University Graduate School of Medicine
Co-authored papers 4
University of Groningen, University Medical Center Groningen
Co-authored papers 4
Vrije Universiteit Amsterdam
Co-authored papers 4
Wageningen University & Research
Co-authored papers 4
European Bioinformatics Institute
Co-authored papers 4
Norwegian University of Science and Technology
Co-authored papers 4
Co-authored papers 4
Delphinai Corporation
Co-authored papers 3
Osaka University
Co-authored papers 3
Duke University
Co-authored papers 3
Hospital Universitario y Politecnico la Fe
Co-authored papers 3
Radboud University Medical Center
Co-authored papers 3
J. Craig Venter Institute
Co-authored papers 3
Leiden University Medical Center
Co-authored papers 3
King Abdullah University of Science and Technology
Co-authored papers 3
Co-authored papers 3